1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gttaaaatttgtctataatccataatttagcttcattgtgaccattaatggatgtacccttccatttatttcttttactcaagtaactattattttgcagGAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG
species | Glycine max |
transcript | GLYMA02G47860.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCG GAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTEST: gi|193655659|gb|FK601429.1|FK601429
genomic: GTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCGgtgagttttt ... tattttgcagGAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: AATCAGAAACTTCTTTGGTACTTAACTCG GAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTEST: gi|193383945|gb|FK351350.1|FK351350
genomic: AATCAGAAACTTC-TTGG-ACTTAACTCGgtgagttttt ... tattttgcagGAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: GTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCG GAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTEST: gi|193329280|gb|FK296518.1|FK296518
genomic: GTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCGgtgagttttt ... tattttgcagGAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: GTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCG GAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTEST: gi|209700567|gb|BW670311.1|BW670311
genomic: GTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCGgtgagttttt ... tattttgcagGAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
EST: GTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCG GAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
genomic: GTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCGgtgagttttt ... tattttgcagGAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGT
taatggatgtacccttccatttatttcttttactcaagtaactattattttgcagGAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG
aagtaac putative branch site (score: 2)
ttatttt putative PPT
atttatttcttttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaaaatttgtctataatccataatttagcttcattgtgaccattaatggatgtacccttccatttatttcttttactcaagtaactattattttgcagGAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG
- - - - - - - - - - - - - - agcttca
- - - - - - - - - - - - - - - - - - - - -ccattaa
- - - - - - - - - - - - - - - - - - - - - - - - tggatgt