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gtaaaacattagtttataatgaacttccccccttttttgcagaaacttcatttgggttatgatagtggtgagtgatgttcttgtccacacagGTCATTAATTTGCGTTCAATCCGGCCACTTGATCGATCCACAATCAATACTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTC
species | Glycine max |
transcript | GLYMA02G46380.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCACTTGATCGATCCACAATCAATACTEST: gi|7041702|gb|AW471543.1|AW471543
genomic: AGGAAGGAATCAGTGCTGAGgtaaaacatt ... gtccacacagGTCATTAATTTGCGTTCAATCCGGCCACTTGATCGATCCACAATCAATACT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCACTTGATCGATCCACAATCAATACTEST: gi|7028855|gb|AW458638.1|AW458638
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacatt ... gtccacacagGTCATTAATTTGCGTTCAATCCGGCCACTTGATCGATCCACAATCAATACT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCACTTGATCGATCCACAATCAATACTEST: gi|6846711|gb|AW349001.1|AW349001
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacatt ... gtccacacagGTCATTAATTTGCGTTCAATCCGGCCACTTGATCGATCCACAATCAATACT
EST: GACACTGGCAAAGGNNNNAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCACTTGATCGATCCACAATCAATACTEST: gi|208141778|gb|GD939550.1|GD939550
genomic: GACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacatt ... gtccacacagGTCATTAATTTGCGTTCAATCCGGCCACTTGATCGATCCACAATCAATACT
EST: CTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCACTTGATCGATCCACAATCAATACTEST: gi|11273897|gb|BF324286.1|BF324286
genomic: CTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacatt ... gtccacacagGTCATTAATTTGCGTTCAATCCGGCCACTTGATCGATCCACAATCAATACT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATTCCG-CCACTTGATCGATCCACAATCAATACEST: gi|21887778|gb|BQ740991.1|BQ740991
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacatt ... gtccacacagGTCATTAATTTGCGTTCAAT-CCGGCCACTTGATCGATCCACAATCAATAC
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCACTTGATCGATCCACAATCAATACT
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacatt ... gtccacacagGTCATTAATTTGCGTTCAATCCGGCCACTTGATCGATCCACAATCAATACT
tgcagaaacttcatttgggttatgatagtggtgagtgatgttcttgtccacacagGTCATTAATTTGCGTTCAATCCGGCCACTTGATCGATCCACAATCAATACTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTC
ttcttgtcc CT-rich tract
ttatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacattagtttataatgaacttccccccttttttgcagaaacttcatttgggttatgatagtggtgagtgatgttcttgtccacacagGTCATTAATTTGCGTTCAATCCGGCCACTTGATCGATCCACAATCAATACTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG