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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttttatccttttcttggtcatggtatctaagttccgtcattcctttaccaaatttgagctaattctcttccctcttctccttgtgctggaaacttcagGAAGCAATGATGAAGGACACATTGGAGCGTGCAAGAGAGCCAAACTTCAATTTGAAAGAGTTCCTTCAGAATGCATATATCCATCCGGTGTTTAAGGGTG

Basic information

species Glycine max
transcript GLYMA02G43910.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294670|gb|FG986519.1|FG986519
EST:     TGTATTGCAAGGGACGATATGAACCTGCTTTCGTTAAGCATCCATTACAG                         GAAGCAATGATGAAGGACACATTGGAGCGCGCAAGAGAGCCAAACTTCGAT
genomic: TGTATTGCAAGGGACGATATGAACCTGCTTTCGTTAAGCATCCATTACAGgttagtcttg ... gaaacttcagGAAGCAATGATGAAGGACACATTGGAGCGTGCAAGAGAGCCAAACTTCAAT
EST: gi|18721745|gb|BM523359.1|BM523359
EST:     TGTATTGCAAGGGACGATATGAACCTGCTTTCGTTAAGCATCCATTACAG                         GAAGCAATGATGAAGGACACATTG
genomic: TGTATTGCAAGGGACGATATGAACCTGCTTTCGTTAAGCATCCATTACAGgttagtcttg ... gaaacttcagGAAGCAATGATGAAGGACACATTG
EST: gi|209701365|gb|BW655961.1|BW655961
EST:     TGTATTGCAAGGGACGATATGAACCTGCTTTCGTTAAGCATCCATTACAG                         GAAGCAATGATGAAGGACACATTGGAGCGCGCAAGAGAGCCAAACTTCAAT
genomic: TGTATTGCAAGGGACGATATGAACCTGCTTTCGTTAAGCATCCATTACAGgttagtcttg ... gaaacttcagGAAGCAATGATGAAGGACACATTGGAGCGTGCAAGAGAGCCAAACTTCAAT
EST: gi|31463488|gb|CD405516.1|CD405516
EST:     TGTATTGCAAGGGACGATATGAACCTGCTTTCGTTAAGCATCCATTACAG                         GAAGCAATGATGAAGGACACATTGGAGCGCGCAAGAGAGCCAAACTTCAAT
genomic: TGTATTGCAAGGGACGATATGAACCTGCTTTCGTTAAGCATCCATTACAGgttagtcttg ... gaaacttcagGAAGCAATGATGAAGGACACATTGGAGCGTGCAAGAGAGCCAAACTTCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaccaaatttgagctaattctcttccctcttctccttgtgctggaaacttcagGAAGCAATGATGAAGGACACATTGGAGCGTGCAAGAGAGCCAAACTTCAATTTGAAAGAGTTCCTTCAGAATGCATATATCCATCCGGTGTTTAAGGGTG
             agctaat  putative branch site (score: 3)
                   ttctcttccctcttct  CT-rich tract
      aaatttga  TA-rich tract