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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaaaatatttaaattggatcatattattttgtactttctaaaataaaatattatttaatataaatatattttttctcattttcattcaaatgtgtacagGTTCGTACTTTCAAAGGCCATGCAAATGAGAAAAACTTTGTTGGTCTTACAGTAAGCAGTGAATATATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTG

Basic information

species Glycine max
transcript GLYMA02G43540.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43540.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 11
ttaaaatatttaaattggatcatattattttgtactttctaaaataaaatatt--atttaatata---aatatattttttctcattttcattcaaatgtgtacagGTTCGTACTTTCAAAGGCCATGCAAATGAGAAAAACTTTGTTGGTCTTACAGTAAGCAGTGAATATATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTG
      | |   ||||   | |  | ||||||    ||||  | |  ||  ||  | ||| |||    || | |||    ||||||   |      |||    ||||||| || |||| ||| ||  | |||||||| ||||| || || ||  | |||| ||||||||||||| | ||||||||||||||||| || ||||| |
---ctttttcccaattcagtaacttcattttgagacttctctattccaacttttgaattattattttcaagaaattaaaactcattccaa--ggggtgttcttagGTTCGCACCTTCAGAGGACACACTAATGAGAAGAACTTCGTGGGCCTCTCTGTAAACAGTGAATATATTTCTTGTGGCAGTGAAACAAACGACGTCTTCG

upper sequence: GLYMA02G43540.2 (Glycine max), 3'ss of exon 11
lower sequence: PP1S86_153V6.1 (Physcomitrella patens), 3'ss of exon 11
ttaaaatatttaaattggatcatattattttgtactttctaaaataaaatattattta-atataaatatattttttctcattttcattcaaatgtgtacagGTTCGTACTTTCAAAGGCCATGCAAATGAGAAAAACTTTGTTGGTCTTACAGTAAGCAGTGAATATATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTG
 ||  |  |   | || ||   |    ||||    | |  |   |  |  || | ||    |||||  ||||    || |  |    |    ||    ||| |  | ||  | ||||| ||  | ||||| || || |||||||| ||||| || | |||||| ||||| || ||||||||||||||||| || || ||||
gtaccagctagcagtttgagtttccgttttttgggtcttgactgtttatgatgacttgtgcataaagttattcaa-ctgacatcaggtgttctgaacgcagATAAGGACACTAAAAGGTCACACCAATGAAAAGAATTTTGTTGGACTTACTGTCAACAGTGAGTATATCGCCTGTGGCAGTGAAACAAACGAGGTGTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845545|gb|BF068639.1|BF068639
EST:     CATCAACAGATAGTACACTGCGATTATGGGATGTGAAGGAAAACTTACCA                         GTTCGTACTTTCAAAGGCCATGCAAATGAGAAAAACTTTGTTGGTCTTACA
genomic: CATCAACAGATAGTACACTGCGATTATGGGATGTGAAGGAAAACTTACCAgtaagtaata ... atgtgtacagGTTCGTACTTTCAAAGGCCATGCAAATGAGAAAAACTTTGTTGGTCTTACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatattatttaatataaatatattttttctcattttcattcaaatgtgtacagGTTCGTACTTTCAAAGGCCATGCAAATGAGAAAAACTTTGTTGGTCTTACAGTAAGCAGTGAATATATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTG
        atttaat  putative branch site (score: 4)
     attatttaatataaat  TA-rich tract