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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcttgataagatgttgctatctgggaattttctcttgcttttttagctacttcattcacagagattcattttctggttgtttactgtttgcctttaggtgatgtccttttgtttggtcaattagttataatgtttaaaatgccattatctgctttatgtggcagAGTGTTCCTGTGCAAGTTGGGCAAACTCCTCCTTTGTTGCAGTATTTTGGAACACTTTTAACAAGGGGAAAGTTGAATGCCTTTGAATCATTAGAATTGT

Basic information

species Glycine max
transcript GLYMA02G42560.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 11
gtttcttgataagatgttgctatctgggaattttctcttgcttttttagctacttcattcacagagattcattttctggttgtttactgtttgccttta-ggtgatgtccttttgtttggtcaattagttataatgtttaaaatgccattatctgctttatgtggcagAGTGTTCCTGTGCAAGTTGGGCAAACTCCTCCTTTGTTGCAGTATTTTGGAACACTTTTAACAAGGGGAAAGTTGAATGCCTTTGAATCATTAGAATTGT
                                                     |||||| ||     ||| | |  |||   | |||   |   ||| | | | |||  ||| || |||     |||| | |   ||||            | |||||||    ||||||||||||||| |||| ||||||||| |||||  | |||||||| ||||| ||| |  ||||  |||| ||| | ||||| |  || ||  | ||  | |
--------------------------------------------------attttcatttact----ttcctgtgttgggactgtacaactaatcttaatgcttatgctcttctgcttgac---ttagctttttcgtttc-----------tgtgctttaaaatgcagAGTGTTCCTGTTCAAGCTGGGCAAACGCCTCCACTCTTGCAGTACTTTGGCACATTGCTAACTCGGGGGAAGCTCAATGCTTACGAGTCTCTTGAGCTAT

upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 11
gtttcttgataagatgttgctatctgggaattttctcttgcttttttagctacttcattcacagagattcattttctggttgtttactgtttgccttta-ggtgatgtccttttgtttggtcaattagttataatgtttaaaatgccattatctgctttatgtggcagAGTGTTCCTGTGCAAGTTGGGCAAACTCCTCCTTTGTTGCAGTATTTTGGAACACTTTTAACAAGGGGAAAGTTGAATGCCTTTGAATCATTAGAATTGT
                                                     |||||| ||     ||| | |  |||   | |||   |   ||| | | | |||  ||| || |||     |||| | |   ||||            | ||||||     ||||||||||||||| |||| ||||||||| |||||  | |||||||| ||||| ||| |  ||||  |||| ||| | ||||| |  || ||  | ||  | |
--------------------------------------------------attttcatttact----ttcctgtgttgggactgtacaactaatcttaatgcttatgctcttctgcttgac---ttagctttttcgtttc-----------tgtgcttttaaatgcagAGTGTTCCTGTTCAAGCTGGGCAAACGCCTCCACTCTTGCAGTACTTTGGCACATTGCTAACTCGGGGGAAGCTCAATGCTTACGAGTCTCTTGAGCTAT

upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 9
gtttcttgataagatgttgctatctgggaattttctcttgcttttttagctacttcattcacagagattcattttctggttgtttactgtttgcctttaggtgatgtccttttgtttggtcaattagttataatgtttaaaatgccattatctgctttatgtggcagAGTGTTCCTGTGCAAGTTGGGCAAACTCCTCCTTTGTTGCAGTATTTTGGAACACTTTTAACAAGGGGAAAGTTGAATGCCTTTGAATCATTAGAATTGT
                                                       |    |    ||||||| | |   |  |  | | |  |  | || ||      | ||| ||||    | || || | |||||||        |||  |  |  |  | |||||||||||||||||||| ||||||||| || ||  | |||||||| ||||| ||| |  ||||  | || ||| | ||||||||||| ||  | ||  | |
------------------------------------------------------cctgctatcaggattcatgtacatttaatcaattctcagtgtataagt-----tcctttctttgacttaataattcttatgttta--------ttactttatcaaaattgcagAGTGTTCCTGTGCAAGCTGGGCAAACACCCCCACTCTTGCAGTACTTTGGCACATTGCTAACTCGAGGGAAGCTCAATGCCTTTGAGTCTCTTGAGCTAT

upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 11
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 11
gtttcttgataagatgttgctatctgggaattttctcttgcttttttagctacttcattcacagagattcattttctggttgtttactgtttgcctttaggtgatgtccttttgtttggtcaattagttataatgtttaaaatgccattatctgctttatgtggcagAGTGTTCCTGTGCAAGTTGGGCAAACTCCTCCTTTGTTGCAGTATTTTGGAACACTTTTAACAAGGGGAAAGTTGAATGCCTTTGAATCATTAGAATTGT
                                            | ||  | |   ||||| ||  |   ||  ||||      |  ||| |         | ||||   |||||     || |  |  |       || ||   ||   | | |   || | ||||||||||||||| ||||  |||||||||||||| ||||| ||||||||||| || ||||| || || || ||| | ||| | | ||| || || ||| | |
-------------------------------------------gtatatgttccatattca-agcaaagaatcctctgtgaacatgttgtcta--------taatgtatgtttgtaacaccagtctgaaac------tacaacatcacactttaca--attttgcagAGTGTTCCTGTACAAGCAGGGCAAACTCCTCCATTGTTACAGTATTTTGGGACCCTTTTGACTAGAGGGAAGCTCAATTCATATGAGTCTTTGGAACTAT

upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 11
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 11
gtttcttgataagatgttgctatctgggaattttctcttgcttttttagctacttcattcacagagattcattttctggttgtttactgtttgcctttaggtga-tgtccttttgtttggtcaattagttataatgtttaaaatgccattatctgctttatgtggcagAGTGTTCCTGTGCAAGTTGGGCAAACTCCTCCTTTGTTGCAGTATTTTGGAACACTTTTAACAAGGGGAAAGTTGAATGCCTTTGAATCATTAGAATTGT
                                                                        | |||  ||  |  |       || |  || |   |  || | | || | || |  |  |||       |||    | | ||   | || | ||||||||||||||| |||| ||| ||||||||||| ||||| ||||||||||| || ||||| || || || ||  | ||| | | ||| ||| | ||| | |
-----------------------------------------------------------------------gtgtctatttcatatccaagcaactatgtgtaaacatgtttatttatgatgaaatgttggtaacacc---aat-ttttcaactctataattttgcagAGTGTTCCTGTACAAGCTGGACAAACTCCTCCATTGTTACAGTATTTTGGGACTCTTTTGACTAGAGGGAAACTCAATTCATATGAGTCACTGGAACTAT

upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 11
gtttcttgataagatgttgctatctgggaattttctcttgcttttttagctacttcattcacagagattcattttctggttgtttactgtttgcctttaggtgatgtccttttgtttggtcaattagttataatgtttaaaatgccattatctgctttatgtggcagAGTGTTCCTGTGCAAGTTGGGCAAACTCCTCCTTTGTTGCAGTATTTTGGAACACTTTTAACAAGGGGAAAGTTGAATGCCTTTGAATCATTAGAATTGT
                                    ||| |||| ||   || ||  ||   | | |  ||||  ||||   |||   ||  |     || || |  ||      || |||   |  || |  ||| |||               |||   | ||||||||||||| |||||  |||||| ||||| |||||| | ||||| |||||||||||| |||| || |||||| | ||||| ||||| ||||| ||||| |
------------------------------------cttcctttattttttattttttt---aaaaaaccattccctggaattttggggtgggaa---agatgctaacc----actttgtc---ttcttctggtgtctaa---------------ttt---ttgcagAGTGTTCCTATGCAATCTGGGCAGACTCCACCTTTGCTACAGTACTTTGGAACACTTCTAACTAGAGGAAAGCTCAATGCATTTGAGTCATTGGAATTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttggtcaattagttataatgtttaaaatgccattatctgctttatgtggcagAGTGTTCCTGTGCAAGTTGGGCAAACTCCTCCTTTGTTGCAGTATTTTGGAACACTTTTAACAAGGGGAAAGTTGAATGCCTTTGAATCATTAGAATTGT
                                      tctgcttt  CT-rich tract
       tcaattagttataatg  TA-rich tract