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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgagacttttctatattttcctctgttaataatagttttgaaaatttttgttttccagGATGAGTACTCCAAATGGCTGCTGGGAAGTCAGAGAAGTCTCCTTGAGGTAATGGCTGAGTTCCCCTCAGCAAAACCACCGCTTGGTGTGTTTTTTGCTG

Basic information

species Glycine max
transcript GLYMA02G37850.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G37850.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 11
----------------------------------------------------------------------------------------------------------------------gttgagacttttctatattttcctctg---ttaataatagttttgaaaatttttgttttccagGATGAGTACTCCAAATGGCTGCTGGGAAGTCAGAGAAGTCTCCTTGAGGTAATGGCTGAGTTCCCCTCAGCAAAACCACCGCTTGGTGTGTTTTTTGCTG
                                                                                                                        ||    | ||  |  ||||   |||   ||| | || | | | |   || || | |||||||||||||||||  ||||| |  | ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || ||||| || ||||| |
gtcaacaaacaactgatgtttttatcttcctctcctcttccccctcaacatccaaattcctgtttcctttttttcattctctctctctctctctctctctctctcgggggatggttgtagtgttggtgttgcaggttttttgctgaatttatttattggtcttatgtttcttatattccagGATGAGTACTCACAATGGGTTGTTGGAAGTCAGAGGAGTCTCCTTGAGGTAATGGCTGAGTTCCCTTCAGCGAAACCTCCCCTCGGTGTTTTCTTTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacttttctatattttcctctgttaataatagttttgaaaatttttgttttccagGATGAGTACTCCAAATGGCTGCTGGGAAGTCAGAGAAGTCTCCTTGAGGTAATGGCTGAGTTCCCCTCAGCAAAACCACCGCTTGGTGTGTTTTTTGCTG
                    tgttaat  putative branch site (score: 3)
                                         tttttgttttcc  putative PPT
                    tgttaataatagtttt  TA-rich tract