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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcagtgaccactgtgaagtaatttttctctaattttctagttaatctatctgattatgcattgtccatttaatttttggaacttctgaactgttttcagTCAATTTGAAGAGAAATTTGAAGAGGTTAATGGTGCTGAGCTCCCCATGATCCCACTTGCTTCCAGTTCTGGTTCCAATGAGCAACTAATGACGGAAATG

Basic information

species Glycine max
transcript GLYMA02G35850.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13790369|gb|BG652960.1|BG652960
EST:     AGAATCATTCTTAGAAGCACAATGGGCCCCATTGATGGCTACCTTATCAG                         TCAATTTGAAGAGAAATTTGAAGAGGTTAATGGTGCTGAGC-CCCCATGAT
genomic: AGAATCATTCTTAGAAGCACAATGGGCCCCATTGATGTCTACCTTATCAGgtataagtgt ... ctgttttcagTCAATTTGAAGAGAAATTTGAAGAGGTTAATGGTGCTGAGCTCCCCATGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatctgattatgcattgtccatttaatttttggaacttctgaactgttttcagTCAATTTGAAGAGAAATTTGAAGAGGTTAATGGTGCTGAGCTCCCCATGATCCCACTTGCTTCCAGTTCTGGTTCCAATGAGCAACTAATGACGGAAATG
                      atttaat  putative branch site (score: 4)
                                             ctgttttc  putative PPT
                      atttaatttttggaa  TA-rich tract