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gttgactaatataatgttgtctccttgcttcagatgtatccttatttcttagtatttattatactcatctttgatatcaatgtaaatcaagccttttttttattatcttctgtgaatcttccactggcttgtcttgatcaaagtttccttttttgtacactcaaaagGCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGAGGAACGGGGCAATTTGCTGTTCAG
species | Glycine max |
transcript | GLYMA02G15070.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG GCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGAEST: gi|213602767|gb|DB968937.1|DB968937
genomic: TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttgactaat ... cactcaaaagGCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA
EST: TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG GCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGAEST: gi|23051289|gb|BU577071.1|BU577071
genomic: TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttgactaat ... cactcaaaagGCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA
EST: TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG GCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGAEST: gi|7926508|gb|AW832534.1|AW832534
genomic: TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttgactaat ... cactcaaaagGCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA
EST: TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG GCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGAEST: gi|19935164|gb|BQ080194.1|BQ080194
genomic: TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttgactaat ... cactcaaaagGCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA
EST: TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG GCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA
genomic: TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttgactaat ... cactcaaaagGCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA
tgaatcttccactggcttgtcttgatcaaagtttccttttttgtacactcaaaagGCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGAGGAACGGGGCAATTTGCTGTTCAG
tcttgat putative branch site (score: 4)
tttccttttttgtac putative PPT
ttttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgactaatataatgttgtctccttgcttcagatgtatccttatttcttagtatttattatactcatctttgatatcaatgtaaatcaagccttttttttattatcttctgtgaatcttccactggcttgtcttgatcaaagtttccttttttgtacactcaaaagGCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGAGGAACGGGGCAATTTGCTGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT