1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ctcctatcattggttgctccggatttgtatgcaatgctcagtagtatggtttcttgatgatcgccattcacctttctccaccctgtttttgcataaatagGCAACCAGACCTAGGTTGGATGAGAAGATTACAACAAATACTTGGACGGAAGCACCAGCACAACCTGCAT
species | Glycine max |
transcript | GLYMA02G12670.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAGAAGCCTTACACTATTGTATACTTTCACTCTGCTTCATCTCTGCAGAT GCAACCAGACCTAG-TTGGATGAGAAGATTACA-CAAATACTTGGAEST: gi|19347220|gb|BM892100.1|BM892100
genomic: CAGAAGCCTTACACTATTGTATACTTTCACTCTGCTTCATCTCTGCAGATgtgagtgtta ... gcataaatagGCAACCAGACCTAGGTTGGATGAGAAGATTACAACAAATACTTGGA
EST: CAGAAGCCTTACACTATTGTATACTTTCACTCTGCTTCATCTCTGCAGAT GCAACCAGACCTAGGTTGGATGAGAAGATTACAACAAATACTTGGACGGAAEST: gi|193697091|gb|FK638905.1|FK638905
genomic: CAGAAGCCTTACACTATTGTATACTTTCACTCTGCTTCATCTCTGCAGATgtgagtgtta ... gcataaatagGCAACCAGACCTAGGTTGGATGAGAAGATTACAACAAATACTTGGACGGAA
EST: CAGAAGCCTTACACTATTGTATACTTTCACTCTGCTTCATCTCTGCAGAT GCAACCAGACCTAGGTTGGATGAGAAGATTACAACAAATACTTGGACGGAA
genomic: CAGAAGCCTTACACTATTGTATACTTTCACTCTGCTTCATCTCTGCAGATgtgagtgtta ... gcataaatagGCAACCAGACCTAGGTTGGATGAGAAGATTACAACAAATACTTGGACGGAA
atggtttcttgatgatcgccattcacctttctccaccctgtttttgcataaatagGCAACCAGACCTAGGTTGGATGAGAAGATTACAACAAATACTTGGACGGAAGCACCAGCACAACCTGCAT
tcttgat putative branch site (score: 4)
cctttctccaccctgt putative PPT
tttttgcataaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcctatcattggttgctccggatttgtatgcaatgctcagtagtatggtttcttgatgatcgccattcacctttctccaccctgtttttgcataaatagGCAACCAGACCTAGGTTGGATGAGAAGATTACAACAAATACTTGGACGGAAGCACCAGCACAACCTGCAT
- - - - - - -ttgctcc
- - - - - - - - - - - - - gtatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - cttgatg