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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtccattgtagaaaatttctgtttagctgctttatcattttggatggttatcttgtttgtcaactaagcattcattcttaattctcgcatgatttttcagGTAGATTATGATGAGGCCATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGA

Basic information

species Glycine max
transcript GLYMA02G10590.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10590.2 (Glycine max), 3'ss of exon 11
lower sequence: AT3G12520.2 (Arabidopsis thaliana), 3'ss of exon 12
--------------gtccattgtagaaaatttctgtttagctgctttatcattttggatggttatcttgtttgtcaactaagcattcattcttaattctcgcatgatttttcagGTAGATTATGATGAGGCCATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGA
                |||    | || | |   |  |   | ||| ||  | ||   |||||||   |      |  |   |||| ||||||  |    |  |    | | |||| || ||||| | ||| || ||| |||||||||| || |||| |||||||  |||||||||||| |||||||| || || |||||| |||| || ||||
gtaagttcaaataaacccaccagaaaagaatctggggtgtgtactt-attgtctt---tggttattgagcaatatatattcacatttattctttctggatgtttaccatattagGTGGACTATGAAGGGGCAATCTTTCTGTGGCGTGTGGACAAGAGAGATTTTACTCTTTGGACCATCACTAGCACCACCACTTTGTTCTTTGGAATAGAGA

upper sequence: GLYMA02G10590.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 3'ss of exon 11
-----gtccat-tgtagaaaatttctgtttagctgctttatcattttggatggttatcttgtttgtcaactaagcattcattcttaattctcgcatgatttttcagGTAGATTATGATGAGGCCATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGA
      | ||| | ||||  |  |   ||  | || |  || |   ||  |  ||   | ||||| | |      ||   ||  | ||  |   |     |||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||  ||||||||||||||||||||||
attattttcatatatagagtaacttacttgggttgatccataagagtgagt--ttcattggtttggcgatgttcaatctctttgttatgtttata----atttcagGTGGATTATGATGAAGCTATTTTTTTATGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCCTTACCAGCACTATGACATTGTTCCTTGGTATTGAGA

upper sequence: GLYMA02G10590.2 (Glycine max), 3'ss of exon 11
lower sequence: PP1S53_215V6.1 (Physcomitrella patens), 3'ss of exon 11
-------------------------------gtccattgtagaaaatttct----gtttagctgctttatcattttggatggttatcttgtttgtcaactaagcattcattcttaattctcgcatgatttttcagGTAGATTATGATGAGGCCATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGA
                               |   |   |||||| | |||    ||   | |||   ||||||||  |   ||||      | |  | | |    |  ||  |  |    | |  |   | ||||| |||||||||||||| || ||||||||||| || || ||||| || |||||||| |||     |||||| |||  |||  | || ||||| |||||| 
gtatatcttctaacctggtacacaaaaccatgattaccctagaaactatctcgcagtgaggttgcg--atcattttttaattttattacacctttgtagtcaaatcttgttagtg-tggatgtaatacgctgcagGTTGATTATGATGAGGCAATATTTTTGTGGCGAGTGGACAAGAAGGACTTTCTTCTCTGGCTTTCTACTAGTACTTTAACGCTTTTTCTTGGCATTGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttatcttgtttgtcaactaagcattcattcttaattctcgcatgatttttcagGTAGATTATGATGAGGCCATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGA
                              tcttaat  putative branch site (score: 3)
                                               tttttc  putative PPT
                        attcattcttaatt  TA-rich tract