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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctacatattttaatttgctttggttggtttgctttgtttatcttattgtttttttggtataactaatatctgtaattttccttttacagGTGGATTCTCTCAG

Basic information

species Glycine max
transcript GLYMA02G08870.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5057797|gb|AI736273.1|AI736273
EST:     CCTGGATATGGTGATGCAGGAGGCATGCATTCTGGAGCCAGGGCAG                         GTGGATTCTCTCAG
genomic: CCTGGATATGGTGATGCAGGAGGCATGCATTCTGGAGCCAGGGCAGgtgctacata ... ccttttacagGTGGATTCTCTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttatcttattgtttttttggtataactaatatctgtaattttccttttacagGTGGATTCTCTCAG
                          aactaat  putative branch site (score: 2)
                                         ttttccttttac  putative PPT
        ttattgtttttttggt  TA-rich tract