Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattcagatatttagtgtataagtatacctatttatggagtgggtagggaggagcagcagttgattggtctagtgatgatcttatttgttgttgtttgacatttttgttatgcagAAAACTGTATTTGGTGGGCAAAAAATCAAGCCAGACTACAATAATATTCCCTATGCAGTGTTCAG

Basic information

species Glycine max
transcript GLYMA02G08180.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37996094|gb|CF807683.1|CF807683
EST:     ACCGAATGAATCTTACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCT                         AAAACTGTATTTGGTGGGCAAAAAATCAAGCCAGACTACAATAATATTCCC
genomic: ACCGAATGAATCTTACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCTgtaagtattc ... tgttatgcagAAAACTGTATTTGGTGGGCAAAAAATCAAGCCAGACTACAATAATATTCCC
EST: gi|192306241|gb|FG995063.1|FG995063
EST:     ACCGAATGAATCTTACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCT                         AAAACTGTATTTGGTGGGCAAAAAATCAAGCCAGACTACAATAATATTCCC
genomic: ACCGAATGAATCTTACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCTgtaagtattc ... tgttatgcagAAAACTGTATTTGGTGGGCAAAAAATCAAGCCAGACTACAATAATATTCCC
EST: gi|7233249|gb|AW568597.1|AW568597
EST:     TCCGGTGGCCTTGATGGAAGCATCGTACTTTGCT                         AAAACTGTATTTGGTGGGCAAAAAATCAAGCCAGACTACAATAATATTCCC
genomic: TCCGGTGGCCTTGATGGAAGCATCGTACTTTGCTgtaagtattc ... tgttatgcagAAAACTGTATTTGGTGGGCAAAAAATCAAGCCAGACTACAATAATATTCCC
EST: gi|192328962|gb|FK019689.1|FK019689
EST:     ACCGAATGAATCTTACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCT                         AAAACTGTATTTGGTGGGCAAAAAATCAAGCCAGACTACAATAATATTCCC
genomic: ACCGAATGAATCTTACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCTgtaagtattc ... tgttatgcagAAAACTGTATTTGGTGGGCAAAAAATCAAGCCAGACTACAATAATATTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgattggtctagtgatgatcttatttgttgttgtttgacatttttgttatgcagAAAACTGTATTTGGTGGGCAAAAAATCAAGCCAGACTACAATAATATTCCCTATGCAGTGTTCAG
                                 gtttgac  putative branch site (score: 4)
                                         tttttgtt  CT-rich tract
                                        atttttgttat  TA-rich tract