Sequence
atgc intronic sequence ATGC exonic sequence...tttttgtatggtgaatgtttgaatcattacattgatgaatgctgaatatgttttgataatgagtttaggtgtgatgtaatacttaccttcctgaaagcagGTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAG
Basic information
species | Glycine max |
transcript | GLYMA02G07510.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G07510.2 (Glycine max), 3'ss of exon 11
lower sequence: AT3G26670.1 (Arabidopsis thaliana), 3'ss of exon 10
-----------------------------------------------tttttgtatggtgaatgtttgaatcattacattgatgaatg---ctgaatatgttttgataatgagtttaggtg-tgatgtaatacttaccttcctgaaagcagGTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAG---------
|| | | | | | || |||| ||||| | | | | ||| | || | | ||| | | | |||| | |||||| ||| ||||| || ||||| |||| ||||||||||| || | |||||||||||||| || || ||||||||||| || ||||||||||| ||| ||
gttcatctattgactacattgtgatgcttttcctctcttttctttatcttcgggctaatacggatctagatgattagtttgatcattttgtcacagaatggtgtgggtttagggatagtcgcttagataattttcttcttccttaaa-cagGTTTTCGATGCGCTAAGAACAACAATGTTCATATTAGGAATGATGTGTGTATTCATAGGCATTTCTTTACTAGCACCTGATGATACAAGAGGCAATGAGA
upper sequence: GLYMA02G07510.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 3'ss of exon 10
tttttgtatggtgaatgtttgaatcattacattgatgaatgctgaatatgttttgataatgagtttagg----tgtgatgtaatactt-accttcctgaaagcagGTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAG
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----aggcttcttgatgcttatagcaatgttcaattctattctctctctcccttc-tcttgagtttagacccatataataagctgcttcactgtttctcaagcagGTATTTGATACATTAAGGACAACAATGTTTATACTAGGAATGATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151399979|gb|EV269850.1|EV269850EST: CAAGAATATCAG GTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTG
genomic: CAAGAATATCAGgtacttcctc ... ctgaaagcagGTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatgttttgataatgagtttaggtgtgatgtaatacttaccttcctgaaagcagGTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAG
tacttac putative branch site (score: 1)
cttaccttcct CT-rich tract
ttttgataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttgtatggtgaatgtttgaatcattacattgatgaatgctgaatatgttttgataatgagtttaggtgtgatgtaatacttaccttcctgaaagcagGTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAG
- - - tatggtg
- - - - - - - atgtttg
- - - - - - - - - - - - - - - - - - gaatgct
- - - - - - - - - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgta