1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...aaccttatatcttcaagatttgtgatattagatgatcgatgtaatacctccaggatttgcactgcacctgatctggtgtttgacttatgtattgtaacagGAATTTCGTCCAGCGAAGCTGCTACTGTTGGACTTGGTGCCGTTCAG
species | Glycine max |
transcript | GLYMA02G06280.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGTATCAATGGAGTTTTGTTCTATTCAACTACCATCTTTGCAAATGCAG GAATTTCGTCCAGCGAAGCTGCTACTGTTGGACTTGGTGCCGCTCAGEST: gi|192311159|gb|FK004792.1|FK004792
genomic: TGGTATCAATGGAGTTTTGTTCTATTCAACTACCATCTTTGCAAATGCAGgtgtagatct ... attgtaacagGAATTTCGTCCAGCGAAGCTGCTACTGTTGGACTTGGTGCCGTTCAG
EST: TGGTATCAATGGAGTTTTGTTCTATTCAACTACCATCTTTGCAAATGCAG GAATTTCGTCCAGCGAAGCTGCTACTGTTGGACTTGGTGCCGCTCAG
genomic: TGGTATCAATGGAGTTTTGTTCTATTCAACTACCATCTTTGCAAATGCAGgtgtagatct ... attgtaacagGAATTTCGTCCAGCGAAGCTGCTACTGTTGGACTTGGTGCCGTTCAG
acctccaggatttgcactgcacctgatctggtgtttgacttatgtattgtaacagGAATTTCGTCCAGCGAAGCTGCTACTGTTGGACTTGGTGCCGTTCAG
gtttgac putative branch site (score: 4)
ttatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaccttatatcttcaagatttgtgatattagatgatcgatgtaatacctccaggatttgcactgcacctgatctggtgtttgacttatgtattgtaacagGAATTTCGTCCAGCGAAGCTGCTACTGTTGGACTTGGTGCCGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - cttcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - ggatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctggtg