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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatttagtctctggggaactgtttttggctttccttaaggtactggggacatgaccattgttgactgctgctaattagGTACTTCCAGATAAGGGCCTAGAAGTTGGATTGTCTGGGTCTGCTGCCAAAGGGAAGCCTCCTACAACGTTGTCACCCTCAATGTTGATTGTTGATTGGA

Basic information

species Glycine max
transcript GLYMA02G05950.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05950.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv04s0023g02560.t01 (Vitis vinifera), 3'ss of exon 13
-----------------------------------------gtac-atttagtctctggggaactgtttttggctttccttaaggtactggggacatgaccattgttgactgctgctaattagGTACTTCCAGATAAGGGCCTAGAAGTTGGATTGTCTGGGTCTGCTGCCAAAGGGAAGCCTCCTACAACGTTGTCACCCTCAATGTTGATTGTTGATTGGA
                                          ||  |||   |   |  | || | || |   |||   || |   | |     |  ||       |  || || ||    || |  | || ||  | |||||  | || ||||| || || || |  || |  || |  || |||||||||||||||||| |||||||| |||| |||||||
gtactctaatttctctcctctcattttgggtggaacaccagttattattggataaatctgcaaattttatgctcttagtttgatcaagtatcttctggaatcaaaatttcttcttctccccagATTTTCCCGGAACATGGCCTGAAGGTAGGATTATCAGGCTCAGGGGCAACTGGAAGACCACCTACAACGTTGTCACCCACAATGTTGGTTGTGGATTGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020577|gb|CX707319.1|CX707319
EST:     GACTGCAGTTGCTT--CTTTCTT-CCTGGTTTCACAAGCCTAGTTTAAAG                         GTACTTCCAGATAAGGGCCTAGAAGTTGGATTGTCTGGGTCTGCTGCCAAA
genomic: GACTGCAGTTGCTTCACTTTCTTCCCTGG-TTCACAAGCCTAGTTTAAAGgtacatttag ... tgctaattagGTACTTCCAGATAAGGGCCTAGAAGTTGGATTGTCTGGGTCTGCTGCCAAA
EST: gi|24205683|gb|BU964936.1|BU964936
EST:     TGACTGCAGTTGCTTCACTTTCTTCCCTGGTTCACAAGCCTAGTTTAAAG                         GTACTTCCAGATAAGGGCCTAGAAGTTGGATTGTCTGGGTCTGCTGCCAAA
genomic: TGACTGCAGTTGCTTCACTTTCTTCCCTGGTTCACAAGCCTAGTTTAAAGgtacatttag ... tgctaattagGTACTTCCAGATAAGGGCCTAGAAGTTGGATTGTCTGGGTCTGCTGCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggctttccttaaggtactggggacatgaccattgttgactgctgctaattagGTACTTCCAGATAAGGGCCTAGAAGTTGGATTGTCTGGGTCTGCTGCCAAAGGGAAGCCTCCTACAACGTTGTCACCCTCAATGTTGATTGTTGATTGGA
                                   tgttgac  putative branch site (score: 3)
                                                taatta  TA-rich tract