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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttggatctgaatgtttctcagatattttaatttagacttaatatacctgttcaaagtgttatttgagtgagtactgttctctttccttgggcatttcctcattattcatatttcttaccctgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG

Basic information

species Glycine max
transcript GLYMA02G04320.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717502|gb|BW654405.1|BW654405
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|120490930|gb|EH219097.1|EH219097
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|120495674|gb|EH223841.1|EH223841
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|15204829|gb|BI427597.1|BI427597
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGAC
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGAC
EST: gi|17518503|gb|BM187545.1|BM187545
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTTCA-CCTGGA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCT-CAACCTGGA
EST: gi|120529136|gb|EH257270.1|EH257270
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|31471775|gb|CD413803.1|CD413803
EST:     CAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: CAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|23064228|gb|BU579001.1|BU579001
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|20498019|gb|BQ272949.1|BQ272949
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|23064069|gb|BU578842.1|BU578842
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|22525213|gb|BU084024.1|BU084024
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|120534088|gb|EH262221.1|EH262221
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|22522320|gb|BU081131.1|BU081131
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCT
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCT
EST: gi|120529217|gb|EH257351.1|EH257351
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|31465137|gb|CD407165.1|CD407165
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|22522821|gb|BU081632.1|BU081632
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|31561742|gb|CD487580.1|CD487580
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAAGCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|20813120|gb|BQ297598.1|BQ297598
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|13482372|gb|BG511715.1|BG511715
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATNGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagAT-GGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAA
EST: gi|120530295|gb|EH258429.1|EH258429
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATC
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATC
EST: gi|22525567|gb|BU084378.1|BU084378
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|120495271|gb|EH223438.1|EH223438
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|13481734|gb|BG511077.1|BG511077
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|37996526|gb|CF808115.1|CF808115
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ANTGGGAGTTATGCTCAATCCACCTCAAC
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagA-TGGGAGTTATGCTCAATCCACCTCAAC
EST: gi|208071978|gb|GD867698.1|GD867698
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|23064220|gb|BU578993.1|BU578993
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|193642786|gb|FK587716.1|FK587716
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|31475761|gb|CD417789.1|CD417789
EST:     TATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: TATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|120494927|gb|EH223094.1|EH223094
EST:     AATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: AATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|13481252|gb|BG510595.1|BG510595
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|23735380|gb|BU765969.1|BU765969
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|17519349|gb|BM188391.1|BM188391
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|20448749|gb|BQ252873.1|BQ252873
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTC
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTC
EST: gi|193715695|gb|FK648970.1|FK648970
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|7326948|gb|AW620746.1|AW620746
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAGATGTTCTAGCGCAGATATCT                         ATGGGAGGTGTGCTCATTCCACCTCAACCTGGAGATATTTCTTATGAC
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGAC
EST: gi|17400294|gb|BM177076.1|BM177076
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|16349405|gb|BI975000.1|BI975000
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|20812986|gb|BQ297464.1|BQ297464
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctctttccttgggcatttcctcattattcatatttcttaccctgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG
                                    ttcttac  putative branch site (score: 2)
                                   tttcttaccctgttct  CT-rich tract
                         attattcatatttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttggatctgaatgtttctcagatattttaatttagacttaatatacctgttcaaagtgttatttgagtgagtactgttctctttccttgggcatttcctcattattcatatttcttaccctgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT