1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...agaacattgcaattcagttatctggatcattcacattatcttcaatttctattttctgtactgattgagtataatggcatttgctttaaatgttgctcagGACGATGCACATATTTTCTGCAGGGAGTCTCAG
species | Glycine max |
transcript | GLYMA02G03750.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGGCTAGTGGCGCCCTGAGTGGATTAACACGTGTTAGGAGATTCCAGCAG GACGATGCACATATTTTCTGCAGGGAGTCTCAGEST: gi|14258843|gb|BG881751.1|BG881751
genomic: AGGCTAGTGGCGCCCTGAGTGGATTAACACGTGTTAGGAGATTCCAGCAGgtaaatcttt ... tgttgctcagGACGATGCACATATTTTCTGCAGGGAGTCTCAG
EST: AGGCTAGTGGCGCCCTGAGTGGATTAACACGTGTTAGGAGATTCCAGCAG GACGATGCACATATTTTCTGCAGGGAGTCTCAG
genomic: AGGCTAGTGGCGCCCTGAGTGGATTAACACGTGTTAGGAGATTCCAGCAGgtaaatcttt ... tgttgctcagGACGATGCACATATTTTCTGCAGGGAGTCTCAG
tttctattttctgtactgattgagtataatggcatttgctttaaatgttgctcagGACGATGCACATATTTTCTGCAGGGAGTCTCAG
tactgat putative branch site (score: 2)
tttaaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaacattgcaattcagttatctggatcattcacattatcttcaatttctattttctgtactgattgagtataatggcatttgctttaaatgttgctcagGACGATGCACATATTTTCTGCAGGGAGTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - cattgca
- - - - - - - - - - - - - -cattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttg