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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctctacagttatttagttcctcatctttgttctgttgtttgtcttttctatacactaacagattttatctcattcttagTTAGAACTTAGTTATAATCCCATTGGACCAGACGGAGCCAAGGCCTTGGCTGAAGTTCTCAAGTTTCATGGGAACATAAAAACCCTTAAGCTTGGTTGGT

Basic information

species Glycine max
transcript GLYMA02G03410.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03410.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 12
gtaagc-ctctacagttattta---gttcctcatctttgttctgtt---gtttgtcttttc---tatacactaacagattttatctcattcttagTTAGAACTTAGTTATAATCCCATTGGACCAGACGGAGCCAAGGCCTTGGCTGAAGTTCTCAAGTTTCATGGGAACATAAAAACCCTTAAGCTTGGTTGGT
|| ||  ||| |   ||||||    ||   | |  ||| | || ||   |||  |     |   |   | ||  |    ||| ||||  ||| |||| ||| |  ||||||||||||| || || || ||||| ||||| ||  |||||||||| |||||||||||||| || |||||||| |||||||||||||
gtgagttctccatttttatttttatgtattttagttttttccttttcgggttaatgacaacagatcctctctctctctctttctctctctctcagTTGGAATTAGGTTATAATCCCATAGGGCCTGAAGGAGCAAAGGCTTTATCTGAAGTTCTGAAGTTTCATGGGAAGATCAAAACCCTGAAGCTTGGTTGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193712424|gb|FK650147.1|FK650147
EST:     GTGTTAATGCCATTGCTCAAGTTTTAAAAGATAACTTAGTTATTACCACT                         TTAGAACTTAGTTATAAT
genomic: GTGTTAATGCCATTGCTCAAGTTTTAAAAGATAACTTAGTTATTACCACTgtaagcctct ... tcattcttagTTAGAACTTAGTTATAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgttctgttgtttgtcttttctatacactaacagattttatctcattcttagTTAGAACTTAGTTATAATCCCATTGGACCAGACGGAGCCAAGGCCTTGGCTGAAGTTCTCAAGTTTCATGGGAACATAAAAACCCTTAAGCTTGGTTGGT
                            cactaac  putative branch site (score: 1)
                                      ttttatctcattctt  putative PPT
                   ttttctata  TA-rich tract