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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaactaattctctgatgaatattatgttcttgtatccttttatttaattgcttgtgtaatgctgatgttgccggtgttctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATGCAAGAAAGCAGTGTGCCTTGTTTGCGTCATAGTGTTGCCTCGTGTAAAT

Basic information

species Glycine max
transcript GLYMA02G01220.3
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208310212|gb|GE107630.1|GE107630
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCA
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCA
EST: gi|193667331|gb|FK608071.1|FK608071
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGT
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGT
EST: gi|17023669|gb|BM094703.1|BM094703
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTC
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTC
EST: gi|193366095|gb|FK329060.1|FK329060
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAAACTGATTCCATCTCAT
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAA-CTGATTCCATCTCAT
EST: gi|208081126|gb|GD880758.1|GD880758
EST:     CCTACCAAATGGGCGTTACCTT-CCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|193316799|gb|FK279519.1|FK279519
EST:     ACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: ACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|16349285|gb|BI974880.1|BI974880
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|193392613|gb|FK358772.1|FK358772
EST:     CCTACCAAATGGGCGTTACCTTCCCC-ACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|193351994|gb|FK316359.1|FK316359
EST:     TACCAAAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: TACC--AAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|193359920|gb|FK324242.1|FK324242
EST:     CCTACCAAATGGGCGTTACCTTCCCC-ACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|193356255|gb|FK321428.1|FK321428
EST:     CCTACCAAATGGGCGTTACCTTCCCC-ACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGT
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGT
EST: gi|207797958|gb|GD768522.1|GD768522
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTG
EST: gi|13791263|gb|BG653854.1|BG653854
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCT
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCT
EST: gi|193349034|gb|FK318152.1|FK318152
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|193476944|gb|FK440421.1|FK440421
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|13562753|gb|BG550973.1|BG550973
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCT
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCT
EST: gi|193303715|gb|FK268989.1|FK268989
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|208249791|gb|GE045470.1|GE045470
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATT
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATT
EST: gi|207794723|gb|GD764810.1|GD764810
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTACAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|9901022|gb|BE609988.1|BE609988
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCC
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCC
EST: gi|207795780|gb|GD764061.1|GD764061
EST:     GCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: GCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|193346877|gb|FK310145.1|FK310145
EST:     CCTACCAAATGGGCGTTACCTT-CCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|7590534|gb|AW706284.1|AW706284
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCT
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatccttttatttaattgcttgtgtaatgctgatgttgccggtgttctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATGCAAGAAAGCAGTGTGCCTTGTTTGCGTCATAGTGTTGCCTCGTGTAAAT
                                            ttctgac  putative branch site (score: 2)
     ttttatttaattgctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagaactaattctctgatgaatattatgttcttgtatccttttatttaattgcttgtgtaatgctgatgttgccggtgttctgacacagAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATGCAAGAAAGCAGTGTGCCTTGTTTGCGTCATAGTGTTGCCTCGTGTAAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA