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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctgagtacaatcgcctcttgatttgaaaatcatggatcatctgcatttacacggaacgttgttgaagtctgggtttcttagttgtgtcatttggtgcagATGCTGCCATCTAAAGATATTAACTTCGTCGGATACACATACAAGAATTTTGAAATCGTGAATGATCATGAAATACCTGGAATTG

Basic information

species Glycine max
transcript GLYMA02G00580.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254322678|gb|GR835500.1|GR835500
EST:     CAGGGCCGTGGAGAAAG                         ATGCTGCCATCTAAAGATATTAACTTCGTCGGATACACATACAAGAATTTT
genomic: CAGGGCCGTGGAGAAAGgtttgttctt ... tttggtgcagATGCTGCCATCTAAAGATATTAACTTCGTCGGATACACATACAAGAATTTT
EST: gi|14009256|gb|BG725860.1|BG725860
EST:     GGGGACAAGCAAACTGTACCTTCCTCAAAGGCAGGGCCGTGGAGAAAG                         ATGCTGCCATCTAAAGATATTAACTTCGTCGGATACACATACAAGAATTTT
genomic: GGGGACAAGCAAACTGTACCTTCCTCAAAGGCAGGGCCGTGGAGAAAGgtttgttctt ... tttggtgcagATGCTGCCATCTAAAGATATTAACTTCGTCGGATACACATACAAGAATTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttacacggaacgttgttgaagtctgggtttcttagttgtgtcatttggtgcagATGCTGCCATCTAAAGATATTAACTTCGTCGGATACACATACAAGAATTTTGAAATCGTGAATGATCATGAAATACCTGGAATTG
                             tttctta  TA-rich tract