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...aaatcagaacacaagtgaatagtgatgattcatttgtaatttaacttattcagttttataggataaaaaattaatggtatttttgttggtggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTGGACAGCCAAGCAGAAGTTCCAAATCATGTCAATGATCAAAGAGCATGAA
species | Glycine max |
transcript | GLYMA01G45380.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGG CAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTGEST: gi|213605993|gb|DB980145.1|DB980145
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
EST: ACAAGTACAGAATAAGG CAATACATGGACCT-AGAAATCAGAGCAATCATGGCGCAATATATGCCCTTEST: gi|151400336|gb|EV270150.1|EV270150
genomic: ACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGA-TTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTT
EST: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGG CAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTGEST: gi|16282736|gb|BI945179.1|BI945179
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
EST: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGG CAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTGEST: gi|12773548|gb|BG238475.1|BG238475
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
EST: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGG CAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTGEST: gi|209710069|gb|BW658871.1|BW658871
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
EST: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGG CAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTGEST: gi|298184325|gb|HO029538.1|HO029538
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
EST: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGG CAATACATGGATTCAGAAATCAGAGTAATCATGGCGCAATATATGCCCTTGEST: gi|214007153|gb|DB985801.1|DB985801
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
EST: TAGTTATGATTGCTGGTGGGGCAATCCTTGTGTACAAGTACAGAATAAGG CAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTGEST: gi|193660132|gb|FK603812.1|FK603812
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
EST: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGG CAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
ttattcagttttataggataaaaaattaatggtatttttgttggtggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTGGACAGCCAAGCAGAAGTTCCAAATCATGTCAATGATCAAAGAGCATGAA
aattaat putative branch site (score: 3)
ttttataggataaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatcagaacacaagtgaatagtgatgattcatttgtaatttaacttattcagttttataggataaaaaattaatggtatttttgttggtggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTGGACAGCCAAGCAGAAGTTCCAAATCATGTCAATGATCAAAGAGCATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - -caagtga
- - - - - - - - - - - tgatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat