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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttccttgtcccttagtaaatcttcattattttgatagtcttgatagttgatatttataatcattttgttgattaatgttcagGGTGGATATGCTGCAAATTTAGCTCCTGCAAAATTAGTTGGCAAATTGCTCAACTTTTTTGATAGCACTGCACATCGAGTTGTTGGTAGTTTACCACCGC

Basic information

species Glycine max
transcript GLYMA01G41800.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41800.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv00s0229g00030.t01 (Vitis vinifera), 3'ss of exon 9
--------gtacttccttgtcccttagtaaatcttcattattttgatagtcttg----atagttgatatttataatcatt--ttgttgattaatgttcagGGTGGATATGCTGCAAATTTAGCTCCTGCAAAATTAGTTGGCAAATTGCTCAACTTTTTTGATAGCACTGCACATCGAGTTGTTGGTAGTTTACCACCGC
         ||   |||| |   |    | ||    ||| ||||  |   || |    | |   |  | | |||    |   |      |  || || ||||||| |||||| ||||  | ||||| ||||||||||| || || |||||||||||| |||||| ||| |||||||| || |||||  | |||||||| |
ggaaccaaatatcaccttttggttctaaatattgggattctttttttgccctgggagaaaaaaaggaactgatatctgtaaataaacattccatttttagGGTGGGTATGCTACAAACCTGGCTCCAGCAAAATTAGTGGGTAAGTTGCTCAACTTTATTGATAACACCGCACATCGTGTGGTTGGAGGCTTACCACCAC

upper sequence: GLYMA01G41800.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv00s2430g00010.t01 (Vitis vinifera), 3'ss of exon 3
-----------gtacttccttgtccc-----ttagtaaatcttcattattttgatagtcttgatag--ttgatatttataatcattttgttgattaatgttcagGGTGGATATGCTGCAAATTTAGCTCCTGCAAAATTAGTTGGCAAATTGCTCAACTTTTTTGATAGCACTGCACATCGAGTTGTTGGTAGTTTACCACCGC
             || |  | || |      || | |    ||  ||    ||  ||     |  |   |||||| | |||  |     |  |||    || ||||||| |||||| ||||  | ||||| ||||||||||| || || |||||||||||| |||||| ||| |||||||| || |||||  | |||||||| |
tttttgataggaaaccttttggttctaaatattgggattctttttttgccctgggagaaaaaaaggaactgatatctgtaaataaacattccatt----tttagGGTGGGTATGCTACAAACCTGGCTCCAGCAAAATTAGTGGGTAAGTTGCTCAACTTTATTGATAACACCGCACATCGTGTGGTTGGAGGCTTACCACCAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgatagtcttgatagttgatatttataatcattttgttgattaatgttcagGGTGGATATGCTGCAAATTTAGCTCCTGCAAAATTAGTTGGCAAATTGCTCAACTTTTTTGATAGCACTGCACATCGAGTTGTTGGTAGTTTACCACCGC
                                          gattaat  putative branch site (score: 3)
               atagttgatatttata  TA-rich tract