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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaacacacaatcatattcagtaatcgtcccacttccttgtttttatttctttctaaagggatttatattaagtttgcttgatttgctaaactttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG

Basic information

species Glycine max
transcript GLYMA01G38410.3
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193667628|gb|FK609810.1|FK609810
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208059830|gb|GD857832.1|GD857832
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTT
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTT
EST: gi|208067928|gb|GD861438.1|GD861438
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAAATGCT
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAA-TGCT
EST: gi|208323699|gb|GE122270.1|GE122270
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193529169|gb|FK484360.1|FK484360
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAA-GCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGG
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGG
EST: gi|193607102|gb|FK557407.1|FK557407
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCT
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCT
EST: gi|208024918|gb|GD826592.1|GD826592
EST:     CATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACGTTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208077550|gb|GD878231.1|GD878231
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208144459|gb|GD941650.1|GD941650
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193609533|gb|FK564831.1|FK564831
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAG
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAG
EST: gi|11274775|gb|BF325110.1|BF325110
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193433027|gb|FK395721.1|FK395721
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGTCTTCTTTGGTTAAATGCTAGATTTCCCAATG
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTG-C-TC-TTGG--AAATGCTAGATTTCCCAATG
EST: gi|254345308|gb|GR851577.1|GR851577
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|13480236|gb|BG509579.1|BG509579
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193518603|gb|FK476160.1|FK476160
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGG
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGG
EST: gi|193584966|gb|FK539387.1|FK539387
EST:     AGTTCATTTTGGTAAACCTTCGACTCCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCT
genomic: AGTTCATTTTGGTAAACCTTCGACTC-ACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCT
EST: gi|208127430|gb|GD925372.1|GD925372
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208313226|gb|GE110924.1|GE110924
EST:     CAGTTCATTTTGGTAAACCTTCGACTCNCGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGTCTTCTTGGAAATGCTAGATTTCCCAATGGGA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTG-C-TCTTGGAAATGCTAGATTTCCCAATGGGA
EST: gi|208333048|gb|GE128151.1|GE128151
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193710114|gb|FK643386.1|FK643386
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193360970|gb|FK323850.1|FK323850
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208080090|gb|GD878462.1|GD878462
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193380761|gb|FK346044.1|FK346044
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|298167280|gb|HO010719.1|HO010719
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193334513|gb|FK298863.1|FK298863
EST:     TCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: TCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208140246|gb|GD936940.1|GD936940
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATGCAGCA                         GTCCTAAAGGGTCA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCA
EST: gi|207787802|gb|GD761544.1|GD761544
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208333932|gb|GE129959.1|GE129959
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193419440|gb|FK383580.1|FK383580
EST:     GTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTAATAACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGAC
genomic: GTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTT-AT-ACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGAC
EST: gi|207766088|gb|GD736891.1|GD736891
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208213003|gb|GE012314.1|GE012314
EST:     AGTTCATTTTGGTTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: AGTTCATTTTGG-TAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208038996|gb|GD834616.1|GD834616
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|207801801|gb|GD772989.1|GD772989
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|23057556|gb|BU578230.1|BU578230
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193665284|gb|FK613876.1|FK613876
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208280146|gb|GE075444.1|GE075444
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193563514|gb|FK519961.1|FK519961
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193661816|gb|FK602658.1|FK602658
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTT
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTT
EST: gi|207726389|gb|GD703735.1|GD703735
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAGAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|207751286|gb|GD725687.1|GD725687
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|308222672|gb|HO760582.1|HO760582
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|308222671|gb|HO760581.1|HO760581
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193415192|gb|FK375756.1|FK375756
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208172250|gb|GD966655.1|GD966655
EST:     AGTTCATTTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: AGTTCA-TTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193717194|gb|FK649922.1|FK649922
EST:     AGTTCATTTTGGTAAACCTTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: AGTTCATTTTGGTAAACC-TTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193480154|gb|FK447288.1|FK447288
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193597274|gb|FK554490.1|FK554490
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193609346|gb|FK562966.1|FK562966
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193541183|gb|FK498739.1|FK498739
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208093235|gb|GD891882.1|GD891882
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208200295|gb|GE001307.1|GE001307
EST:     CAGTCCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193631112|gb|FK579555.1|FK579555
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|254337587|gb|GR849433.1|GR849433
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTC
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTC
EST: gi|207726087|gb|GD702789.1|GD702789
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGAACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193471084|gb|FK436983.1|FK436983
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|15001132|gb|BI321946.1|BI321946
EST:     CAGGTCATTTTGGGAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACTTTGCTCTTGGAAATGCTAGAATTCCCAATGGGA-A
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193401211|gb|FK370154.1|FK370154
EST:     GAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: GAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193717484|gb|FK651650.1|FK651650
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGG
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGG
EST: gi|207717247|gb|GD697224.1|GD697224
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193342663|gb|FK306489.1|FK306489
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|13482091|gb|BG511434.1|BG511434
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193340054|gb|FK305393.1|FK305393
EST:     GAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: GAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208106653|gb|GD906512.1|GD906512
EST:     AAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGAT
genomic: AAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGAT
EST: gi|298186383|gb|HO037016.1|HO037016
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193628128|gb|FK576742.1|FK576742
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208067910|gb|GD861420.1|GD861420
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGC
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGC
EST: gi|208278272|gb|GE075727.1|GE075727
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208070001|gb|GD868774.1|GD868774
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|5753558|gb|AI960845.1|AI960845
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|7588809|gb|AW704596.1|AW704596
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|208316856|gb|GE111395.1|GE111395
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGG
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGG
EST: gi|208257117|gb|GE052318.1|GE052318
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193532042|gb|FK489244.1|FK489244
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193609071|gb|FK561655.1|FK561655
EST:     GGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: GGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|15286677|gb|BI470568.1|BI470568
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
EST: gi|193601653|gb|FK549488.1|FK549488
EST:     CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA                         GTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA
genomic: CAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAgtatgtgcct ... ctttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctttctaaagggatttatattaagtttgcttgatttgctaaactttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG
                                      tgctaaa  putative branch site (score: 2)
               atttatattaagttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaacacacaatcatattcagtaatcgtcccacttccttgtttttatttctttctaaagggatttatattaagtttgcttgatttgctaaactttgtgcagGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG

- acacaca
- - - - - - - - - - - - - tcccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttga