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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaataaatttcatttccatctacatttgaaactgtgaattctcctttcttgttgtatctccctcacaaaacttatcgcctgggtctcgagttcagGTGAAGAAGTCATGGCTTGATGTTCAGCTCTGTAAGGATGGAACCCAAGATTGTTTTGCATCAAATAACACCACTGTTGGGGGAGTACTCAAATTTCCAA

Basic information

species Glycine max
transcript GLYMA01G35690.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35690.1 (Glycine max), 3'ss of exon 11
lower sequence: AT2G35610.1 (Arabidopsis thaliana), 3'ss of exon 10
gtgaataaatttcatttccatctacatttgaaactgtgaattctcctttcttgttgtatctccctcacaaaacttatc--gcctgggtctcgagttcagGTGAAGAAGTCATGGCTTGATGTTCAGCTCTGTAAGGATGGAACCCAAGATTGTTTTGCATCAAATAACACCACTGTTGGGGGAGTACTCAAATTTCCAA
                      || || |          ||     |||||  ||     |  |  | ||||  | ||  |  ||    |    ||||||||||  |||||||||||||||||||||| ||| | || ||||   |||  ||    |||||||||||||| |         | || || || || ||||
---------------------gta-atatagccgcccagatatatttttctaattaatcatttcatagaaaaaatgtcaggagtgaaaatatttttcagGTGAAAGAGTCATGGCTTGATGTTCAGCTTTGTCAAGAAGGAAAAGAAGGATGCGAGGCATCAAATAACACTAGCCCCTCTCGGGTTCTTAAGTTCCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574709|gb|CX547684.1|CX547684
EST:     TAGATATTAGAGAGTACTCAATACTTGATAATCCCATCCTCCCCTCAGAG                         GTGAAGAAGTCATGGCTTGATGTTCAGCTCTGTAAGGATGGAACCCAAGAT
genomic: TAGATATTAGAGAGTACTCAATACTTGATAATCCCATCCTCCCCTCAGAGgtgaataaat ... tcgagttcagGTGAAGAAGTCATGGCTTGATGTTCAGCTCTGTAAGGATGGAACCCAAGAT
EST: gi|57574398|gb|CX547373.1|CX547373
EST:     TAGATATTAGAGAGTACTCAATACTTGATAATCCCATCCTCCCCTCAGAG                         GTGAAGAAGTCATGGCTTGATGTTCAGCTCTGTAAGGATGGAACCCAAGAT
genomic: TAGATATTAGAGAGTACTCAATACTTGATAATCCCATCCTCCCCTCAGAGgtgaataaat ... tcgagttcagGTGAAGAAGTCATGGCTTGATGTTCAGCTCTGTAAGGATGGAACCCAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctttcttgttgtatctccctcacaaaacttatcgcctgggtctcgagttcagGTGAAGAAGTCATGGCTTGATGTTCAGCTCTGTAAGGATGGAACCCAAGATTGTTTTGCATCAAATAACACCACTGTTGGGGGAGTACTCAAATTTCCAA
                   ccctcac  putative branch site (score: 3)
                          aaaacttat  TA-rich tract