1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gggttatgtttggggtgtgctaaaatttggctatctttaaacttagttttgcattttaactccatggttgtctgagcaagcttctgttacttcatgacagAGTATATGCAAAGTGGCAGAGCAACTGAGAAGTCTGATGTGTATAGCTTTGGTGTGTTGACACTTGAAGTGCTGAGTGGAAAGCGGCCAACAGACGCAGC
species | Glycine max |
transcript | GLYMA01G35390.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATCTCACATCACCACCATTGTTGCTGGAACGTTTGGTTATCTAGCTCCAG AGTATATGCAAAGTGGCAGAGCAACTGAGAAGCCTGATGTGTATAGCTTTGEST: gi|208237188|gb|GE033824.1|GE033824
genomic: ATCTCACATCACCACTATTGTTGCTGGAACGTTTGGTTATCTAGCTCCAGgtaggcaatg ... ttcatgacagAGTATATGCAAAGTGGCAGAGCAACTGAGAAGTCTGATGTGTATAGCTTTG
EST: ATCTCACATCACCACTATTGTTGCTGGAACGTTTGGTTATCTAGCTCCAG AGTATATGCAAAGTGGCAGAGCAACTGAGAAGTCTGATGTGTATAGCTTTGEST: gi|21601017|gb|BQ611348.1|BQ611348
genomic: ATCTCACATCACCACTATTGTTGCTGGAACGTTTGGTTATCTAGCTCCAGgtaggcaatg ... ttcatgacagAGTATATGCAAAGTGGCAGAGCAACTGAGAAGTCTGATGTGTATAGCTTTG
EST: ATCTCACATCACCACTATTGTTGCTGGAACATTTGGTTATCTAGCTCCAG AGTATATGCAAAGTGGCAGAGCAACTGAGAAGTCTGATGTGTATAGCTTTG
genomic: ATCTCACATCACCACTATTGTTGCTGGAACGTTTGGTTATCTAGCTCCAGgtaggcaatg ... ttcatgacagAGTATATGCAAAGTGGCAGAGCAACTGAGAAGTCTGATGTGTATAGCTTTG
gttttgcattttaactccatggttgtctgagcaagcttctgttacttcatgacagAGTATATGCAAAGTGGCAGAGCAACTGAGAAGTCTGATGTGTATAGCTTTGGTGTGTTGACACTTGAAGTGCTGAGTGGAAAGCGGCCAACAGACGCAGC
ttttaac putative branch site (score: 2)
ttacttc putative PPT
attttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggttatgtttggggtgtgctaaaatttggctatctttaaacttagttttgcattttaactccatggttgtctgagcaagcttctgttacttcatgacagAGTATATGCAAAGTGGCAGAGCAACTGAGAAGTCTGATGTGTATAGCTTTGGTGTGTTGACACTTGAAGTGCTGAGTGGAAAGCGGCCAACAGACGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - -atgtttg
- - - - - - gggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatggt