Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcattccaacgtgcattggtgttcacttttattcttccctgtcaaattagatgcatgtgatgttgcaaaatgatgttaactctctttctgaaattggcagGCGGTGATGGAGATCTATAACATGTATCGCCCTCACCTTTCAGCAAAAGCCATGCTAGTCCTGTTTGATGCTCTGCACGATGTTGCGATACATGCACACC

Basic information

species Glycine max
transcript GLYMA01G34560.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G34560.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 10
tcattccaac-gtgcattggtgttcacttttatt-cttccctgtcaaattagatgcatgtgatgttgcaaaatga-tgttaactctctttctgaaattggcagGCGGTGATGGAGATCTATAACATGTATCGCCCTCACCTTTCAGCAAAAGCCATGCTAGTCCTGTTTGATGCTCTGCACGATGTTGCGATACATGCACACC
   | | | |  | |  |    |||| |||||   | |  |  |  |  |   ||  |    | |  ||| |||| | | ||||||||   | || ||| |||||||| ||||||||||| ||||||||| | ||||  ||||||||||||   ||  ||||||| ||  ||||  |||| ||||| ||    ||||| ||| 
---tactagctatactatatatttcaattttaccgcattacgatttatgttactgtttcaattttctcaacatgaatataaactctctaattaaatttgacagGCGGTTATGGAGATCTACAACATGTATAGGCCTCGACTTTCAGCAAAAAATATCATAGTCCTCTTCAATGCGATGCATGATGTGGCATCCCATGCTCACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4313578|gb|AI460697.1|AI460697
EST:     ATTTAGCTGACGCACCATGCCGAGCTGCTGTTCAACTTTTATTGATTCAN                         GCGGTGATGGAGATCTATAACATGTATCGCCCTCACCTTTCAGCAAAAGCC
genomic: ATTTAGCTGACGCAAAATGCCGAGCTGCTGTTCAACTTTTATTGATTCAGgtaattttat ... aaattggcagGCGGTGATGGAGATCTATAACATGTATCGCCCTCACCTTTCAGCAAAAGCC
EST: gi|14012075|gb|BG727006.1|BG727006
EST:     ATTTAGCTGACGCAAAATGCCGAGCTGCTGTTCAACTTTTATTGATTCAG                         GCGGTGATGGAGATCTATAACATGTATCGCCCTCACCTTTCAGCAAAAGCC
genomic: ATTTAGCTGACGCAAAATGCCGAGCTGCTGTTCAACTTTTATTGATTCAGgtaattttat ... aaattggcagGCGGTGATGGAGATCTATAACATGTATCGCCCTCACCTTTCAGCAAAAGCC
EST: gi|6914523|gb|AW396053.1|AW396053
EST:     ATTTAGCTGACGCAAAATGCCGAGCTGCTGTTCAACTTTTATTGATTCAG                         GCGGTGATGGAGATCTATAACATGTATCGCCCTCACCTTTCAGCAAAAGCC
genomic: ATTTAGCTGACGCAAAATGCCGAGCTGCTGTTCAACTTTTATTGATTCAGgtaattttat ... aaattggcagGCGGTGATGGAGATCTATAACATGTATCGCCCTCACCTTTCAGCAAAAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagatgcatgtgatgttgcaaaatgatgttaactctctttctgaaattggcagGCGGTGATGGAGATCTATAACATGTATCGCCCTCACCTTTCAGCAAAAGCCATGCTAGTCCTGTTTGATGCTCTGCACGATGTTGCGATACATGCACACC
                            tgttaac  putative branch site (score: 2)
                     aaaatgat  TA-rich tract