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...agtttcaattgcaacatgtgtttgcttctaatttttttttagtttcatcttgaaatttggttacaaaattgtttaaactttttttcttaaatttctgcagTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAATTCTACTGCAGTACAG
species | Glycine max |
transcript | GLYMA01G32810.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTG TAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAEST: gi|192316760|gb|FK006463.1|FK006463
genomic: AGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGgtatgtttta ... atttctgcagTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAA
EST: AGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTG TAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAEST: gi|192316761|gb|FK006464.1|FK006464
genomic: AGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGgtatgtttta ... atttctgcagTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAA
EST: AGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTG TAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAEST: gi|192312071|gb|FK005612.1|FK005612
genomic: AGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGgtatgtttta ... atttctgcagTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAA
EST: AGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTG TAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAA
genomic: AGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGgtatgtttta ... atttctgcagTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAA
catcttgaaatttggttacaaaattgtttaaactttttttcttaaatttctgcagTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAATTCTACTGCAGTACAG
tttctgc CT-rich tract
ttacaaaattgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttcaattgcaacatgtgtttgcttctaatttttttttagtttcatcttgaaatttggttacaaaattgtttaaactttttttcttaaatttctgcagTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAATTCTACTGCAGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - -caattgc
- - - - - - -acatgtg
- - - - - - - - - - - tgcttct