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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttactttgcagtacagtaattgcatattcccaagtcctaaccatttttcttgtcattttgaatatttaatgggtttttactgttgggctttcaaacttttctatgcagTACTTGGCTTACCCTATGATCATCCGTTGGATATGTGGTCTGTAGGATGTTGTTTGTATGAACTCTATACAGGGAAAGTTCTTTTTCCAGGTTTTACTAA

Basic information

species Glycine max
transcript GLYMA01G20810.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G20810.1 (Glycine max), 3'ss of exon 11
lower sequence: AT3G25840.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaagttactttgcagtacagtaattg-catattcccaagtcctaaccatttttcttgtcattttgaatatttaatgggtttttactgttgggctttcaaacttttctatgcagTACTTGGCTTACCCTATGATCATCCGTTGGATATGTGGTCTGTAGGATGTTGTTTGTATGAACTCTATACAGGGAAAGTTCTTTTTCCAGGTTTTACTAA
                    |||| |  ||||||     ||  |||  |        |   |||| | |  | ||     | | ||||    ||||  |  |||| |  |||||| || ||  |  ||||||| |||||||||||||| |||||||| || || ||| ||||||| || ||||  || ||||||||||| || ||    || ||
--------------------gtaagtatcatatttt-gggttgtaaaga--------ggacttttcattggtgaagaatatgtgactg--aagcttctattctttccattgcagTTCTGGGGCTCACCTATGACCATCCGTTGGATATATGGTCTGTTGGCTGCTGTCTGTATGAGCTTTATAGTGGAAAAGTTCTTTTCCCTGGCGCCACAAA

upper sequence: GLYMA01G20810.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 9
-------------------------gtaagttactttgcagtacagtaattgcatattcccaagtcctaaccatttttc----ttgtcattttgaatatttaatgggtttttact-gttgggctttcaaacttttc--tatgcagTACTTGGCTTACCCTATGATCATCCGTTGGATATGTGGTCTGTAGGATGTTGTTTGTATGAACTCTATACAGGGAAAGTTCTTTTTCCAGGTTTTACTAA
                         ||   ||  |||| | |  | ||||   || |||   |||  ||   | ||| |    |  | |||||       |  ||  | || | |  ||  |  |  ||   ||||  | |||||| || ||||| || ||||| |||||  ||||||| |||||||| || |||||||||||||| || ||||| || |||||||||||||| |||  | | ||
gtaagtcccattctcgaaccatcccgttgatttgtttgaaatg-attaatataatcttctttagt--taggtagtttgccaaataattatttttggagaatgctgtctcttaaatcatttagtctctaattctttccttctgcagTTCTAGGCTTGCCTTATGACCATCCCATGGATATTTGGTCTGTTGGTTGTTGTTTGTATGAGCTTTATACGGGAAAAGTTCTTTTTCCGGGTCCTTCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttgaatatttaatgggtttttactgttgggctttcaaacttttctatgcagTACTTGGCTTACCCTATGATCATCCGTTGGATATGTGGTCTGTAGGATGTTGTTTGTATGAACTCTATACAGGGAAAGTTCTTTTTCCAGGTTTTACTAA
          atttaat  putative branch site (score: 4)
                                          cttttctat  putative PPT
     tgaatatttaat  TA-rich tract