1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaatgcatataaacaatctgaatcaccaagttgtaatatgtgtctctggaatgaatgttgcattatctcttattgatattttttattactgtgttgtcagATATCAAGCATCGCACGCAGTCAGCGTCAGGTCATGCATCAATTGGACAATCTCAATAATCTTCTCAGGGGGAGCTTGGGGGAGAAGTCTCGCCCAACAA
species | Glycine max |
transcript | GLYMA01G09660.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGATGGATGAG ATATCAAGCATCGCACGCAGTCAGCGTCAGGTCATGCATCAATTGGACAAT
genomic: TGATGGATGAGgtattctgag ... gtgttgtcagATATCAAGCATCGCACGCAGTCAGCGTCAGGTCATGCATCAATTGGACAAT
ctggaatgaatgttgcattatctcttattgatattttttattactgtgttgtcagATATCAAGCATCGCACGCAGTCAGCGTCAGGTCATGCATCAATTGGACAATCTCAATAATCTTCTCAGGGGGAGCTTGGGGGAGAAGTCTCGCCCAACAA
tattgat putative branch site (score: 3)
attatctcttattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgcatataaacaatctgaatcaccaagttgtaatatgtgtctctggaatgaatgttgcattatctcttattgatattttttattactgtgttgtcagATATCAAGCATCGCACGCAGTCAGCGTCAGGTCATGCATCAATTGGACAATCTCAATAATCTTCTCAGGGGGAGCTTGGGGGAGAAGTCTCGCCCAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- -tgcatat
- - - - - - - - - - - tcaccaa
- - - - - - - - - - - - - - - - - - tatgtgt
- - - - - - - - - - - - - - - - - - - - - -ctctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgca