1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tattagcagcacataggaaaatctaaaaacatgatctttcattggatataatttttttaaaaaaaattagttttttccttattttttttcatgctaacagGTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCATGCATCAGATCTTACCACAAAATCGATGGCTTTGGTTGCACTATTAAAGC
species | Glycine max |
transcript | GLYMA01G03890.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACATGTTAGTTAATAATGTTGGAATGCTTGACATAGAAGATCCAATAACA GTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCATEST: gi|213606433|gb|DB962998.1|DB962998
genomic: ACATGTTAGTTAATAATGTTGGAATGCTTGACATAGAAGATCCAATAACAgtgagtgcta ... atgctaacagGTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCAT
EST: ACATGTTAGTTAATAATGTTGGAATGCTTGACATAGAAGATCCAATAACA GTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCATEST: gi|17518713|gb|BM187755.1|BM187755
genomic: ACATGTTAGTTAATAATGTTGGAATGCTTGACATAGAAGATCCAATAACAgtgagtgcta ... atgctaacagGTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCAT
EST: GTTGGAATGCTTGACATAGAAGATCCAATAACA GTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCAT
genomic: GTTGGAATGCTTGACATAGAAGATCCAATAACAgtgagtgcta ... atgctaacagGTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCAT
atataatttttttaaaaaaaattagttttttccttattttttttcatgctaacagGTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCATGCATCAGATCTTACCACAAAATCGATGGCTTTGGTTGCACTATTAAAGC
ttttttccttattttt CT-rich tract
atttttttaaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattagcagcacataggaaaatctaaaaacatgatctttcattggatataatttttttaaaaaaaattagttttttccttattttttttcatgctaacagGTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCATGCATCAGATCTTACCACAAAATCGATGGCTTTGGTTGCACTATTAAAGC
- - - - gcacata
- - - - - - - - gaaaatc
- - - - - - - - - - - - - - -catgatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa