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gtcctgcaattcagtaactttttacttcttcctattcaatttcttgcatatgctgattttagttggaaaacaacagGGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCTGCACTGGCTATAGCACTTTCCATTATCCGAGCCAATCCTGCTGTTTTGG
species | Glycine max |
transcript | GLYMA0028S00210.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAAGGGATCAG GGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCTEST: gi|305377781|gb|HO652012.1|HO652012
genomic: GAAGGGATCAGgtcctgcaat ... aaaacaacagGGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCT
EST: GTGGAATTGATGATTCTGGGGGAGCTGCTGTTCCTTGGGGAAGGGATCAG GGACGTCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCTEST: gi|151393898|gb|EV263769.1|EV263769
genomic: GTGGAATTGATGATTCTGGGGGAGCTGCTGTTCCTTGGGGAAGGGATCAGgtcctgcaat ... aaaacaacagGGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCT
EST: GTGGAATTGATGATTCTGGGGGAGCTGCTGTTCCTTGGGGAAGGGATCAG GGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCTEST: gi|207809397|gb|GD782703.1|GD782703
genomic: GTGGAATTGATGATTCTGGGGGAGCTGCTGTTCCTTGGGGAAGGGATCAGgtcctgcaat ... aaaacaacagGGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCT
EST: GTGGAATTGATGATTCTGGGGGAGCTGCTGTTCCTTGGGGAAGGGATCAG GGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCT
genomic: GTGGAATTGATGATTCTGGGGGAGCTGCTGTTCCTTGGGGAAGGGATCAGgtcctgcaat ... aaaacaacagGGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCT
ttacttcttcctattcaatttcttgcatatgctgattttagttggaaaacaacagGGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCTGCACTGGCTATAGCACTTTCCATTATCCGAGCCAATCCTGCTGTTTTGG
tgctgat putative branch site (score: 3)
tattcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcctgcaattcagtaactttttacttcttcctattcaatttcttgcatatgctgattttagttggaaaacaacagGGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCTGCACTGGCTATAGCACTTTCCATTATCCGAGCCAATCCTGCTGTTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT