1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttcctatttcaagttttttggcagcagtttatggaatagctttcacccattctatctcagaagaagtctttagtgtttacaaacatgttagattttgagaatgaaatctgtagttagtacacgtgttcaaaactcatcatgatgtaaataagactcattttccttaatccactttattcagGTTTTAGGCTTGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAGAGTGA
species | Glycine max |
transcript | GLYMA20G29930.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAGGCGAACCTGGCGGAGTGTACAGCAGACCAAATTGATACACTGCAAG GTTTTAGGCTTGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAAEST: gi|151413033|gb|EV282841.1|EV282841
genomic: CAAGGCGAACCTGGCGGAGTGTACAGCAGACCAAATTGATACACTGCAAGgttcctattt ... ctttattcagGTTTTAGGCTTGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAA
EST: CAAGGCGAACCTGGCGGAGTGTACAGCAGACCAAATTGATACACTGCAAG GTTTTAGGCTTGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAA
genomic: CAAGGCGAACCTGGCGGAGTGTACAGCAGACCAAATTGATACACTGCAAGgttcctattt ... ctttattcagGTTTTAGGCTTGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAA
tcaaaactcatcatgatgtaaataagactcattttccttaatccactttattcagGTTTTAGGCTTGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAGAGTGA
ccttaat putative branch site (score: 4)
tccacttt CT-rich tract
atgtaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctatttcaagttttttggcagcagtttatggaatagctttcacccattctatctcagaagaagtctttagtgtttacaaacatgttagattttgagaatgaaatctgtagttagtacacgtgttcaaaactcatcatgatgtaaataagactcattttccttaatccactttattcagGTTTTAGGCTTGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAGAGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG