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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtaggttcccgtagaattatggtttactttttcttggtgatatatttcccccctaaaatgttgtctttgcttatagtagctacacaaagcatttctttttcatctttctactaaacaaattctggccagGGTGCTATCTTGACCCATGGAAACTTTATTGCAAGTGTTGCTGGGAGTACTATGGACGAGAAATTCGGTCCTTCTGATGT

Basic information

species Glycine max
transcript GLYMA20G28200.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294241|gb|FG986330.1|FG986330
EST:     ATGACATTGCAACCATTTGCTACACAAGTGGTACAACTGGAACCCCAAAA                         GGTGCTATCTTGACCCATGGAAACTTTATTGCAAGTGTTGCTGGGAGTACT
genomic: ATGACATTGCAACCATTTGCTACACAAGTGGTACAACTGGAACCCCAAAAgtacgtaggt ... ttctggccagGGTGCTATCTTGACCCATGGAAACTTTATTGCAAGTGTTGCTGGGAGTACT
EST: gi|7692762|gb|AW760861.1|AW760861
EST:     ATGACATTGCAACCATTTGCTACACAAGTGGTACAACTGGAACCCCAAAA                         GGTGCTATCTTGACCCATGGAAACTTTATTGCAAGTGTTGCTGGGAGTACT
genomic: ATGACATTGCAACCATTTGCTACACAAGTGGTACAACTGGAACCCCAAAAgtacgtaggt ... ttctggccagGGTGCTATCTTGACCCATGGAAACTTTATTGCAAGTGTTGCTGGGAGTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtagctacacaaagcatttctttttcatctttctactaaacaaattctggccagGGTGCTATCTTGACCCATGGAAACTTTATTGCAAGTGTTGCTGGGAGTACTATGGACGAGAAATTCGGTCCTTCTGATGT
                                  tactaaa  putative branch site (score: 1)
 atttcttttt  TA-rich tract