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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatctatttgcttaatttattattaacgaaatgacacaccaacatatgtcaacattaattcgtctgtgtaggtttttgtgcatgtctagtggaaattgaaatatatgcttgttatatgctattacttcttctattctcctaagtgcaacttcagaagtatctatatggaatgctggaacagGTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTTCGTGCTATCTCTCTGCTTGCTCCTGTGATGGGCCCTGAAATCACTTGTT

Basic information

species Glycine max
transcript GLYMA20G24790.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24790.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G102858_T01 (Zea mays), 3'ss of exon 10
gttcatctatttgcttaatttattattaacgaaatgacacaccaacatatgtcaacattaattcgtctgtgtaggtttttgtgcatgtctagtggaaattgaaatatatgcttgttatatgctattacttcttctattctcctaagtgcaact-tcagaagtatctatatggaatgctggaacagGTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTTCGTGCTATCTCTCTGCTTGCTCCTGTGATGGGCCCTGAAATCACTTGTT
                                                                                      ||  || ||  |||| |||| |   |  | ||     |||| || |   |      | | || || | |    | | || |       |  |     |||||||||||| ||  ||||| ||||| ||| ||||||||||||||| | | |  ||||| ||| |||| |||||||| ||||| ||||| ||||| ||  
-------------------------------------------------------------------------------------ggtaaagagggtattggaataaaatttactcatggttaattaattatatcaacagattgattgaaaatctttatattgtcaaatctcttttatattctagGTTTTGGAGAAGATAAACAACCCACATTATCTGTATCGGATGACCACTTTGCAAGCTATTTCTTTGCTAGCTCCTGTCATGGGTCCTGATATCACATGCC

upper sequence: GLYMA20G24790.1 (Glycine max), 3'ss of exon 10
lower sequence: AT1G13320.1 (Arabidopsis thaliana), 3'ss of exon 10
gttcatctatttgcttaatttattattaacgaaatgacacaccaacatatgtcaacattaattcgtctgtgtaggtttttgtgcatgtctagtggaaattgaaatat-atgcttgttatatgctattacttct--tctattctcctaagtgcaactt-cagaagtatctatatggaatgctggaacagGTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTTCGTGCTATCTCTCTGCTTGCTCCTGTGATGGGCCCTGAAATCACTTGTT
                                                                                           ||     | ||||| | | || | |  |||| | | | |||   || |   |  ||  |     ||   | ||||| | ||       || |  |||||| | |||||||  ||||| ||||||||| | ||||||||||| |||||||||||  | || || || ||||| || |||||  | || ||||| ||||
-------------------------------------------------------------------------------------------gtttgtgtagaaatcttaagcatatagtatgttttcaattcaaatcgagcattttagctattggttattggagtatattta-------cttgttcagGTTCTAGAGATGATTAACAACCCACACTATCTATATCGGATGACGATTCTTCGTGCAGTATCGCTTCTCGCTCCAGTAATGGGATCCGAGATCACATGTT

upper sequence: GLYMA20G24790.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 3'ss of exon 9
gttcatctatttgcttaatttattattaacgaaatgacacaccaacatatgtcaacattaattcgtctgtgtaggtttttgtgcatgtctagtggaaattgaaatatatgcttgt-tatatgctattacttcttctattctcctaagtgcaacttcagaagtatctatatggaatgctggaacagGTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTTCGTGCTATCTCTCTGCTTGCTCCTGTGATGGGCCCTGAAATCACTTGTT
                                                                                   |        ||||  |||  || | || |||  |||   | ||   || |  | || | || |   ||  |||  ||| |  |  | |     |  |  ||||| ||||||||||  |||||| ||||||||||||||||||||||  |||| || || || || || ||||| ||||  |||||| | ||||| |||| ||
---------------------------------------------------------------------------------aacgccatatatggattttgccat-tctgtttgaatatggacgatcttttatcatctttttctcat--cattttctaaagcaa-tgcaagttccacctgggcagGTCTTGGAGATGATTAACAATTCACACTATTTGTATCGGATGACTGTTCTACGGGCAATTTCCCTACTTGCCCCTGCCATGGGCGCAGAAATTACTTATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22930981|gb|BU548120.1|BU548120
EST:     TTGCTGAAGAATTTGGACCTGAGTGGNNNATGCAGCACATAATTCCTCAG                         GTTNTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT
genomic: TTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... gctggaacagGTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT
EST: gi|192298924|gb|FG987669.1|FG987669
EST:     TTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT
genomic: TTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... gctggaacagGTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT
EST: gi|9205515|gb|BE331739.1|BE331739
EST:     TTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAT                         GTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT
genomic: TTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... gctggaacagGTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT
EST: gi|151394585|gb|EV264456.1|EV264456
EST:     GGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT
genomic: GGGCTATGCAGCACATAATTCCTCAGgttcatctat ... gctggaacagGTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT
EST: gi|6914739|gb|AW396269.1|AW396269
EST:     TTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT
genomic: TTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... gctggaacagGTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT
EST: gi|254327333|gb|GR836942.1|GR836942
EST:     TTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT
genomic: TTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... gctggaacagGTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT
EST: gi|308098474|gb|HO760215.1|HO760215
EST:     TTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT
genomic: TTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... gctggaacagGTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT
EST: gi|308098470|gb|HO760211.1|HO760211
EST:     TTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT
genomic: TTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... gctggaacagGTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttctattctcctaagtgcaacttcagaagtatctatatggaatgctggaacagGTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTTCGTGCTATCTCTCTGCTTGCTCCTGTGATGGGCCCTGAAATCACTTGTT
                               tatctatat  TA-rich tract