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...aatgtgggacttgggttttttccaatatgacttatttttggagtatgagaaataactgaacatatttctcaaacaatttgcatgacacttgatcccatagGTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATATATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGG
species | Glycine max |
transcript | GLYMA20G24070.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATCCTGGATATEST: gi|16279439|gb|BI943437.1|BI943437
genomic: TTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttacc ... gatcccatagGTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATAT
EST: TTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATATEST: gi|208048001|gb|GD848752.1|GD848752
genomic: TTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttacc ... gatcccatagGTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATAT
EST: ATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATCCTGGATATEST: gi|16279488|gb|BI943462.1|BI943462
genomic: ATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttacc ... gatcccatagGTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATAT
EST: TTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATATEST: gi|16278548|gb|BI942962.1|BI942962
genomic: TTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttacc ... gatcccatagGTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATAT
EST: TTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATATEST: gi|19346883|gb|BM891771.1|BM891771
genomic: TTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttacc ... gatcccatagGTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATAT
EST: TTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATATEST: gi|16279486|gb|BI943461.1|BI943461
genomic: TTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttacc ... gatcccatagGTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATAT
EST: TTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATAT
genomic: TTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttacc ... gatcccatagGTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATAT
tgagaaataactgaacatatttctcaaacaatttgcatgacacttgatcccatagGTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATATATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGG
aacatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgtgggacttgggttttttccaatatgacttatttttggagtatgagaaataactgaacatatttctcaaacaatttgcatgacacttgatcccatagGTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATATATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- tgtggga
- - - - - - gggtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - actgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgac