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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttttctattcattgatcttttttggtctaaggtatgctattgaaaggtatgatctccttaatgaaattgtgttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG

Basic information

species Glycine max
transcript GLYMA20G23080.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G23080.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0060g01290.t01 (Vitis vinifera), 3'ss of exon 10
---------------gtaagttttttctattcattgatcttttttggtctaaggtatgctattgaaaggtatgatctccttaatgaaat-tgtgttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
                |  | |||| | |  |||  | |   |||    | || | |   ||     ||| |||| |  |||||    | | |||| ||||||| ||||||| |||||||||| ||||| |||||||||||||||||||||
gtatgtgatgctgccttctgcttttgccac-catatagcgcattttccatcagatttttcatatctgggt-tgattt--ttaattttgtgtatgtt-ttgcagGCTGAGAAGGCAGCATTTGATGAGGCAGAGAAGAAGAGGGAAGAGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13482210|gb|BG511553.1|BG511553
EST:     GCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: GCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|254348439|gb|GR852118.1|GR852118
EST:     CAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|193341174|gb|FK306414.1|FK306414
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGG
EST: gi|254340600|gb|GR850902.1|GR850902
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|7925290|gb|AW831316.1|AW831316
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|208223262|gb|GE025725.1|GE025725
EST:     GAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: GAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|31469544|gb|CD411572.1|CD411572
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|31311102|gb|CD396305.1|CD396305
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|6094883|gb|AW119550.1|AW119550
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|208254222|gb|GE051692.1|GE051692
EST:     CTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|213597276|gb|DB977751.1|DB977751
EST:     ATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: ATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|10710593|gb|BF010311.1|BF010311
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|213591613|gb|DB975302.1|DB975302
EST:     TGCCAAACAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCAAGAT-AAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: TGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGC-ATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|58021776|gb|CX708517.1|CX708517
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|213596806|gb|DB978038.1|DB978038
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|192307920|gb|FK003068.1|FK003068
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|26268307|gb|CA819370.1|CA819370
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|254340601|gb|GR850903.1|GR850903
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|209698332|gb|BW678063.1|BW678063
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|209711758|gb|BW678940.1|BW678940
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|208042272|gb|GD839550.1|GD839550
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAAGAAGAGGGAAGAGG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAA-GAAGAGGGAAGAGG
EST: gi|208301469|gb|GE099861.1|GE099861
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCTATTTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAGG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGC-ATTT-GAAGAGGCTGAGAAGAAGAGGGAAGAGGAGG
EST: gi|193459866|gb|FK425207.1|FK425207
EST:     CTGAATATGCCAAGCAACTGGCTAAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|16997164|gb|BM086536.1|BM086536
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|6915349|gb|AW396879.1|AW396879
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|5126765|gb|AI748501.1|AI748501
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|193382511|gb|FK345778.1|FK345778
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAGGAA
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAGGAA
EST: gi|18040353|gb|BM308647.1|BM308647
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|254332430|gb|GR843907.1|GR843907
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|214007293|gb|DB986229.1|DB986229
EST:     CTGAATATGAAAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|207842657|gb|GD815965.1|GD815965
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAC                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAGGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|209719567|gb|BW651019.1|BW651019
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|213591169|gb|DB982911.1|DB982911
EST:     TGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: TGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|19934771|gb|BQ079801.1|BQ079801
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAAAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|9900782|gb|BE609750.1|BE609750
EST:     GGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGATAAGAAGAGGGAAGAGGAG
genomic: GGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|193325608|gb|FK288442.1|FK288442
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGG-AAGAGGAGGAA
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAGGAA
EST: gi|192307919|gb|FK003067.1|FK003067
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|254348789|gb|GR852468.1|GR852468
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|254348440|gb|GR852119.1|GR852119
EST:     AAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: AAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|26047705|gb|CA784416.1|CA784416
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|26045988|gb|CA783372.1|CA783372
EST:     CTGAATATGCCAAGCAACTGGCTGAAAAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCCTTTGAAGAGGCTGAAAAGAAGAGGGAA
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAA
EST: gi|15203979|gb|BI426756.1|BI426756
EST:     CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
EST: gi|213601764|gb|DB982489.1|DB982489
EST:     AGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT                         GTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
genomic: AGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATgtaagttttt ... gttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaaggtatgctattgaaaggtatgatctccttaatgaaattgtgttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG
                              ccttaat  putative branch site (score: 4)
                                            tgttctt  putative PPT
                                ttaatgaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttttttctattcattgatcttttttggtctaaggtatgctattgaaaggtatgatctccttaatgaaattgtgttcttgcagGTTGAGAAGACAGCATTTGAAGAGGCTGAGAAGAAGAGGGAAGAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG