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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggtttgacatatgagaaatagctttcacaagaagtataaatatgtcttcagtaaattactgtaacaagtcatttccctgtatctaatgcagGATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACCTCAAAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAG

Basic information

species Glycine max
transcript GLYMA20G22210.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G22210.1 (Glycine max), 3'ss of exon 10
lower sequence: AT3G05910.1 (Arabidopsis thaliana), 3'ss of exon 10
gtggtttgacatatgagaaatagctttcacaagaagtataaatatgtcttcagtaaattactgtaacaagtcatttccctgtatctaatgcagGATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACCTCAAAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAG
|| |||  | | || | ||| |  | |       |   |   ||   | ||| |  || ||| |||    | | |    | | || |   ||||||||||| | || ||||| |  |   | || ||||||||||  ||    || |||||||||||||| ||||| || ||||||||||||||| | |||||
gttgttctatagatcataaaaacttgtggacttcaccctt--taaagcatcattgtatcactctaatcgtttaatcttttat-tcgagaacagGATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAG

upper sequence: GLYMA20G22210.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0060g00230.t01 (Vitis vinifera), 3'ss of exon 10
----gtggtttgacatatgagaaatagctttcaca--agaagtataaatatgtcttcagtaaattactgtaacaagtcatttccctgta-tctaatgcagGATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACCTCAAAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAG
     |  | |      |||         |||| |   |    ||||  |  |  | | | |||  || ||   |   ||||||   |  | |    |||||||||||||||||||||||||||| || |||||||||||||  ||    ||||| || || |||||||||||||||||||||||||||||  | |||||
taatataatctctttattgaagctctatgttcatattggccacataatgacattataatttaatctctttattgaagtatttcctaattctttggaacagGATTCAGGAATCAAATGCTGAATGCAATAAAAGGCTTCTCAATGTCTAAACAAAACGGGTTATTCATAAATTCATGTTTTGCTCACTGCCAGACAGAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatatgtcttcagtaaattactgtaacaagtcatttccctgtatctaatgcagGATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACCTCAAAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAG
                                            atctaat  putative branch site (score: 3)
             agtaaatta  TA-rich tract