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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttgaagctttcaacatacttgagtttttttaccgtatgatctgctcattgtggtatttatttggtttcagATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAG

Basic information

species Glycine max
transcript GLYMA20G22190.3
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G22190.2 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os05g46270.1 (Oryza sativa), 3'ss of exon 10
gttcttgaagc-tttcaacatacttgagtttttttaccgtatgatctgctcattgtggtatttatttggtttcagATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAG
     || |||  |   |  | |||| ||      || | ||| | | | || |     | || |    || ||| |||||||||||||  |  | || ||||||||||| |||||||| ||||| || ||||| ||||| |||||||| ||||||  ||
--gtatgcagcactgtgatttgcttg-gtacagacactg-atgttgtacacacttgaccaattttcatattgcagGTTTTGGAGGAGCTTGAACTCACTATGGACCAATTCATTGACTTGTGCATCCTATCTGGATGTGACTATTGTGATAGCATTAAAG

upper sequence: GLYMA20G22190.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0060g00210.t01 (Vitis vinifera), 3'ss of exon 10
gttcttgaagctttcaacatacttgagtttttttaccgtatgatctgctcattgtggtatttatttg-gtttcagATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAG
|| ||| ||  |||  | ||| | || | |  || | | ||  |   ||| ||    || | | ||  ||||||||||||||||||||| ||| | |||||||| ||||| |||||| | ||||||||||| || |||||||||||||||||||||||||
gtgcttaaaaattttga-ata-tggaatctgattgctg-atttttcactctttccaataatgaattatgtttcagATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295942|gb|FG990938.1|FG990938
EST:     TGGATCCAAGCTCNNNNNNN-TTCCAGTGATGGAATTCGAAGTTGCAA-G                         ATTTTGGAGGAGCTAAATATGACCATGGA
genomic: TGGATCCAAGCTCAAAAAAAATTCCAGTGATGGAATTCGAAGTTGCAAAGgttcttgaag ... ttggtttcagATTTTGGAGGAGCTAAATATGACCATGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttgagtttttttaccgtatgatctgctcattgtggtatttatttggtttcagATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAG
                                        tttattt  CT-rich tract
                                      tatttatttggttt  TA-rich tract