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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaacagaagtcccttctttcagctctgtggactacattaatttatacaaaccaatgaataccaaaatataaagtttgtcacatacagcatttaggccttatctgtgacctaaattgaaaattttcaatcatgtgtgcagTGATGCATCATTTGGTTATCCTGGGGGGCCCATTCTTTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGAATTGCAA

Basic information

species Glycine max
transcript GLYMA20G16170.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G16170.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv02s0025g02160.t01 (Vitis vinifera), 3'ss of exon 11
gtagaacagaagtcccttctttcagctctgtggactacattaatttatacaaaccaatgaataccaaaatataaagtttgtcacatacagcatttaggccttatctgtgacctaaattgaaaattttcaatcatgtgtgcagTGATGCATCATTTGGTTATCCTGGGGGGCCCATTCTTTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGAATTGCAA
                                       || |   |  |  | |    |  |  | |||||  | ||| |  | ||    |  | |    ||  ||| |  |   ||||   || | ||   ||  |||||||||||||||||||||||||||||||| ||| |  | |||||||||||||| |||||||| ||||| ||||| || |||||||
---------------------------------------tttaca-acccccatcttgaagaaatagaatatttattttattccttaactaagctggatgctaattgtaa--tgtgttgatgtttcttaaatgtgactgcagTGATGCATCATTTGGTTATCCTGGGGGCCCCTTATTATTTAAGAATTTGAATTTTGGGATAGATCTAGACAGCCGCATTGCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208145586|gb|GD942707.1|GD942707
EST:     GACTTCCCCACTCCAGAAGATAGACCTGGTGCACCGATAATAAGTTTCAG                         TGATGCATCATTTGGTTATCCTGGGGGGCCCATTACTTTTTAAGAATTTGA
genomic: GACTTCCCCACTCCAGAAGATAGACCTGGTGCACCGATAATAAGTTTCAGgtagaacaga ... atgtgtgcagTGATGCATCATTTGGTTATCCTGGGGGGCCCATT-CTTTTTAAGAATTTGA
EST: gi|13789096|gb|BG651687.1|BG651687
EST:     GATAGACCTGGTGCACCGATAATAAGTTTCAG                         TGATGCATCATTTGGTTATCCTGGGGGGCCCATTCTTTTTAAGAATTTGAA
genomic: GATAGACCTGGTGCACCGATAATAAGTTTCAGgtagaacaga ... atgtgtgcagTGATGCATCATTTGGTTATCCTGGGGGGCCCATTCTTTTTAAGAATTTGAA
EST: gi|22523787|gb|BU082598.1|BU082598
EST:     GATAGACCTGGTGCACCGATAATAAGTTTCAG                         TGATGCATCATTTGGTTATCCTGGGGGGCCCATTCTTTTTAAGAATTTGAA
genomic: GATAGACCTGGTGCACCGATAATAAGTTTCAGgtagaacaga ... atgtgtgcagTGATGCATCATTTGGTTATCCTGGGGGGCCCATTCTTTTTAAGAATTTGAA
EST: gi|192322574|gb|FK014695.1|FK014695
EST:     GACTTCCCCACTCCAGAAGATAGACCTGGTGCACCGATAATAAGTTTCAG                         TGATGCATCATTTGGTTATCCTGGGGGGCCCATTCTTTTTAAGAATTTGAA
genomic: GACTTCCCCACTCCAGAAGATAGACCTGGTGCACCGATAATAAGTTTCAGgtagaacaga ... atgtgtgcagTGATGCATCATTTGGTTATCCTGGGGGGCCCATTCTTTTTAAGAATTTGAA
EST: gi|193655966|gb|FK606638.1|FK606638
EST:     GACTTCCC-ACTCCAGAAGATAGACCTGGTGCACCGATAATAAGTTTCAG                         TGATGCAATACAATTTGGTTATCCT
genomic: GACTTCCCCACTCCAGAAGATAGACCTGGTGCACCGATAATAAGTTTCAGgtagaacaga ... atgtgtgcagTGATGCA-T-CA-TTTGGTTATCCT
EST: gi|207843169|gb|GD815119.1|GD815119
EST:     GACTTCCCCACTCCAGAAGATAGACCTGGTGCACCGATAATAAGTTTCAG                         TGATGCATCATTTGGTTATCCTGGGGGGCCCATTCTTTTTAAGAATTTGAA
genomic: GACTTCCCCACTCCAGAAGATAGACCTGGTGCACCGATAATAAGTTTCAGgtagaacaga ... atgtgtgcagTGATGCATCATTTGGTTATCCTGGGGGGCCCATTCTTTTTAAGAATTTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagcatttaggccttatctgtgacctaaattgaaaattttcaatcatgtgtgcagTGATGCATCATTTGGTTATCCTGGGGGGCCCATTCTTTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGAATTGCAA
                      acctaaa  putative branch site (score: 3)
                         taaattgaaaattttc  TA-rich tract