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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtggtttaacttgatttcaataactttgaatctattaaagctggtgttaccttcagaaaaatcattgttttttggtacctaacttgcaagGTCATAAAAAGTTCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCTGAGCAAAAGAA

Basic information

species Glycine max
transcript GLYMA20G16070.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18732552|gb|BM527107.1|BM527107
EST:     CTTGGCTTCCACAAGAAAGAGTAGACGAG                         GTCATAAAAAGTTCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCT
genomic: CTTGGCTTCCACAAGAAAGAGTAGACGAGgtacgtggtt ... aacttgcaagGTCATAAAAAGTTCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCT
EST: gi|208233205|gb|GE033564.1|GE033564
EST:     AAGAGTGGAAAGTAAAGAAGCCTTGGCTTCCACAAGAAAGAGTAGACGAG                         GTCATAAAAAGTCCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCT
genomic: AAGAGTGGAAAGCAAAGAAGCCTTGGCTTCCACAAGAAAGAGTAGACGAGgtacgtggtt ... aacttgcaagGTCATAAAAAGTTCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCT
EST: gi|254342760|gb|GR858922.1|GR858922
EST:     TGGAAAGCAAAGAAGCCTTTGGCTTCCACAAGAAAGAGTAGACGAG                         GTCATAAAAAGTTCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCT
genomic: TGGAAAGCAAAGAAGCC-TTGGCTTCCACAAGAAAGAGTAGACGAGgtacgtggtt ... aacttgcaagGTCATAAAAAGTTCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCT
EST: gi|151401588|gb|EV271402.1|EV271402
EST:     AAGAGTGGAAAGCAAAGAAGCCTTGGCTTCCACAAGAAAGAGTAGACGAG                         GTCATAAAAAGTTCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCT
genomic: AAGAGTGGAAAGCAAAGAAGCCTTGGCTTCCACAAGAAAGAGTAGACGAGgtacgtggtt ... aacttgcaagGTCATAAAAAGTTCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaagctggtgttaccttcagaaaaatcattgttttttggtacctaacttgcaagGTCATAAAAAGTTCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCTGAGCAAAAGAA
                                         acctaac  putative branch site (score: 2)
                     aaaaatcattgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgtggtttaacttgatttcaataactttgaatctattaaagctggtgttaccttcagaaaaatcattgttttttggtacctaacttgcaagGTCATAAAAAGTTCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCTGAGCAAAAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA