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gtgtgtatacattaacaagcttacataggaattatgtttagtatacttctattataattgacatatcattatgatgcagGATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCGAGCTTTATTCTTAACCA
species | Glycine max |
transcript | GLYMA20G16030.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGTTCCTGGTGCTGGACTTGGTCGGCTGGCCCTGGAGATTTCATGTTTAG GATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCGAEST: gi|308098770|gb|HO760511.1|HO760511
genomic: AGTTCCTGGTGCTGGACTTGGTCGGCTGGCCCTGGAGATTTCATGTTTAGgtgtgtatac ... tatgatgcagGATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCGA
EST: AGTTCCTGGTGCTGGACTTGGTCGGCTGGCCCTGGAGATTTCATGTTTAG GATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCGAEST: gi|7146905|gb|AW508827.1|AW508827
genomic: AGTTCCTGGTGCTGGACTTGGTCGGCTGGCCCTGGAGATTTCATGTTTAGgtgtgtatac ... tatgatgcagGATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCGA
EST: AGTTCCTGGTGCTGGACTTGGTCGGCTGGCCCTGGAGATTTCATGTTTAG GATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCGAEST: gi|9204212|gb|BE330436.1|BE330436
genomic: AGTTCCTGGTGCTGGACTTGGTCGGCTGGCCCTGGAGATTTCATGTTTAGgtgtgtatac ... tatgatgcagGATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCGA
EST: AGTACCTGGTGCTGGACTTGGTCGGCTGGCCCTGGAGATTTCATGTTTAG GATTTATCAGTCAGGGAAATGAAGTTTCATACTACATGATGATATGCTCGA
genomic: AGTTCCTGGTGCTGGACTTGGTCGGCTGGCCCTGGAGATTTCATGTTTAGgtgtgtatac ... tatgatgcagGATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCGA
ataggaattatgtttagtatacttctattataattgacatatcattatgatgcagGATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCGAGCTTTATTCTTAACCA
aattgac putative branch site (score: 3)
aattatgtttagtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtatacattaacaagcttacataggaattatgtttagtatacttctattataattgacatatcattatgatgcagGATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCGAGCTTTATTCTTAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT