1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agccgttaattcttaattaaagattgaattatatcccatgaataaaagactgctcacaagttattacacaaactaaattttcttttttctgtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGACTGCGCTTGCGTGATTCTTATATTACTACCCTAAACGTGTGCCAAGCCT
species | Glycine max |
transcript | GLYMA20G09810.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGGAACTCCTCCTTCAG GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGAEST: gi|17153948|gb|BM143881.1|BM143881
genomic: AAGGAACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
EST: GTTGAGGACCATGTACGAAGAAACCAA-GACCTCCTCCTTCAG GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGAEST: gi|151398094|gb|EV267972.1|EV267972
genomic: GTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
EST: GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAG GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGAEST: gi|51344741|gb|CO985474.1|CO985474
genomic: GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
EST: GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAG GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGAEST: gi|58014712|gb|CX701454.1|CX701454
genomic: GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
EST: GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAG GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGAEST: gi|192315707|gb|FK011175.1|FK011175
genomic: GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
EST: GGAACTCCTCCTTCAG GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGAEST: gi|22931876|gb|BU549015.1|BU549015
genomic: GGAACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
EST: GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAG GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGAEST: gi|193708942|gb|FK645054.1|FK645054
genomic: GGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
EST: AACTCCTCCTTCAG GTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
genomic: AACTCCTCCTTCAGgtaaagctac ... gtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGA
aagactgctcacaagttattacacaaactaaattttcttttttctgtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGACTGCGCTTGCGTGATTCTTATATTACTACCCTAAACGTGTGCCAAGCCT
aactaaa putative branch site (score: 2)
ttttcttttttctgta CT-rich tract
ttattacacaaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agccgttaattcttaattaaagattgaattatatcccatgaataaaagactgctcacaagttattacacaaactaaattttcttttttctgtattggtagGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGACTGCGCTTGCGTGATTCTTATATTACTACCCTAAACGTGTGCCAAGCCT
- - - - - - - - - - - - - - - - - -ccatgaa
- - - - - - - - - - - - - - - - - - - - - - - - -ctgctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaaac