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...agcgagttctagttatgacattacgacatagttataagttgataaccattgtatgtgctgcgtggttaatggctcatttcctttatttcattcatttcagGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAGTTGCTGCCGGATCCATGGACTCCTGAATCTGGATTGGTCACTGCAGCTC
species | Glycine max |
transcript | GLYMA20G07280.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAG GTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAGEST: gi|11687916|gb|BF595592.1|BF595592
genomic: TGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAGgttagtgtta ... ttcatttcagGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAG
EST: TGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAG GTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAGEST: gi|5753616|gb|AI960903.1|AI960903
genomic: TGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAGgttagtgtta ... ttcatttcagGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAG
EST: TGTGTAACANACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAG GTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGAEST: gi|6069481|gb|AW099161.1|AW099161
genomic: TGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAGgttagtgtta ... ttcatttcagGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGA
EST: TGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAG GTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAGEST: gi|7028370|gb|AW458153.1|AW458153
genomic: TGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAGgttagtgtta ... ttcatttcagGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAG
EST: GCAGTCTATTTCCAAG GTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAGEST: gi|120529641|gb|EH257775.1|EH257775
genomic: GCAGTCTATTTCCAAGgttagtgtta ... ttcatttcagGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAG
EST: TGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAG GTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAGEST: gi|22929083|gb|BU546222.1|BU546222
genomic: TGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAGgttagtgtta ... ttcatttcagGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAG
EST: TGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAG GTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAGEST: gi|10234151|gb|BE803039.1|BE803039
genomic: TGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAGgttagtgtta ... ttcatttcagGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAG
EST: TGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAG GTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAGEST: gi|7796660|gb|AW782055.1|AW782055
genomic: TGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAGgttagtgtta ... ttcatttcagGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAG
EST: TGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAG GTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAG
genomic: TGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAGgttagtgtta ... ttcatttcagGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAG
ccattgtatgtgctgcgtggttaatggctcatttcctttatttcattcatttcagGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAGTTGCTGCCGGATCCATGGACTCCTGAATCTGGATTGGTCACTGCAGCTC
ggttaat putative branch site (score: 4)
tttcctttatttcatt putative PPT
tttatttcattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcgagttctagttatgacattacgacatagttataagttgataaccattgtatgtgctgcgtggttaatggctcatttcctttatttcattcatttcagGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAGTTGCTGCCGGATCCATGGACTCCTGAATCTGGATTGGTCACTGCAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgctgc