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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaacaattttcttctattgctcacggtgattatgaatttcttatcttagtttgccaagcacttcaacatgtgtccagCTTCAAATGGAAATCCTCAACATTCAGATTCTTTGCATTACATTGATGCATATGGTCGGCTAAATTCATACCAACAG

Basic information

species Glycine max
transcript GLYMA19G42790.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 3'ss of exon 11
gtaagtaacaattttcttctattgctcacggtgattatgaatttct----tatcttagtttgccaagca--cttcaacatgtgtccagCTTCAAATGGAAATCCTCAACATTCAGATTCTTTGCATTACATTGATGCATATGGTCGGCTAAATTCATACCAACAG
|||| ||    |   |||     | |  |  |  || ||  ||| |    | | |  ||||    |||   | |     | ||||||||||||||||||||||||| |  | ||||||||||||| ||||||||| | | |||  || | ||| | |||||||||
gtaaatactcttcagctttgcaggattgctatctttttgcttttttgtaatttttctgtttcatgagcggccattttattttgtccagCTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCAGGTTCAATGCTTACCAACAG

upper sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 3'ss of exon 8
gtaagtaacaattttcttctattgctcacggtgattatgaatttct----tatcttagtttgccaagca--cttcaacatgtgtccagCTTCAAATGGAAATCCTCAACATTCAGATTCTTTGCATTACATTGATGCATATGGTCGGCTAAATTCATACCAACAG
|||| ||    |   |||     | |  |  |  || ||  ||| |    | | |  ||||    |||   | |     | ||||||||||||||||||||||||| |  | ||||||||||||| ||||||||| | | ||| ||| | ||| | |||||||||
gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccgttttattttgtccagCTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCCGGTTCAATGCTTACCAACAG

upper sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0030g00550.t01 (Vitis vinifera), 3'ss of exon 7
gtaagtaacaattttcttctattgctcacggtgattatgaatttct----tatcttagtttgccaagca--cttcaacatgtgtccagCTTCAAATGGAAATCCTCAACATTCAGATTCTTTGCATTACATTGATGCATATGGTCGGCTAAATTCATACCAACAG
|||| ||    |   |||     | |  |  |  || ||  ||| |    | | |  ||||    |||   | |     | ||||||||||||||||||||||||| |  | ||||||||||||| ||||||||| | | |||  || | ||| | |||||||||
gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccattttattttgtccagCTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCAGGTTCAATGCTTACCAACAG

upper sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 10
gtaagtaacaattttcttctattgctcacggtgattatgaatttct----tatcttagtttgccaagca--cttcaacatgtgtccagCTTCAAATGGAAATCCTCAACATTCAGATTCTTTGCATTACATTGATGCATATGGTCGGCTAAATTCATACCAACAG
|||| ||    |   |||     | |  |  |  || ||  ||| |    | | |  ||||    |||   | |     | ||||||||||||||||||||||||| | || ||||||||||||| ||||||||| | | ||| ||| | ||| | |||||||||
gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccgttttattttgtccagCTTCAAATGGAAATCCTCGAAATCCAGATTCTTTGCACTACATTGATCCTTCTGGCCGGTTCAATGCTTACCAACAG

upper sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 3'ss of exon 8
gtaagtaacaattttcttctattgctcacggtgattatgaatttct----tatcttagtttgccaagca-cttcaacatgt-gtccagCTTCAAATGGAAATCCTCAACATTCAGATTCTTTGCATTACATTGATGCATATGGTCGGCTAAATTCATACCAACAG
|||| ||    |   |||     | |  |  |  || ||  ||| |    | | |  ||||    |||| ||     || | ||||||| |||||||||||||| | |  | ||||||||||||| ||||||||| | | ||| | | | ||| | |||||||||
gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcagctgttttattttgtccagCATCAAATGGAAATCCGCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCCAGTTCAATGCTTACCAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acggtgattatgaatttcttatcttagtttgccaagcacttcaacatgtgtccagCTTCAAATGGAAATCCTCAACATTCAGATTCTTTGCATTACATTGATGCATATGGTCGGCTAAATTCATACCAACAG
 tgctcac  putative branch site (score: 2)
      attatgaatttcttat  TA-rich tract