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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccatgctttactaagataacatgttttatttggctttgttacattttctctgcaatttttttatttgaaatagcaatgtttggcagtttgtattctgtgctttcctttatcgtgtggacattattttgaattttgttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAGTCCAACAGTTGGGGGTCAAGTCAATGTCCTTGGGTCCTACAAGGTCCAG

Basic information

species Glycine max
transcript GLYMA19G41770.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192329435|gb|FK022183.1|FK022183
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAA-GTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|207795814|gb|GD764081.1|GD764081
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAA
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACA-
EST: gi|192314476|gb|FK008418.1|FK008418
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|21677579|gb|BQ629930.1|BQ629930
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|208297654|gb|GE090601.1|GE090601
EST:     GCGCTCAACCTCCTGCTGTGCCTCCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|207815069|gb|GD787785.1|GD787785
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|208277632|gb|GE078251.1|GE078251
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|10253837|gb|BE821603.1|BE821603
EST:     GATTCAACTTCAATTAGAAG                         GAGCTTTGGNNGGTCTATCAGTAAAGTGACTAAAGTNNTCCAGTTNNNNAG
genomic: GATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|192314475|gb|FK008417.1|FK008417
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG
EST: gi|192329436|gb|FK022184.1|FK022184
EST:     GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAG                         GAGCTTTGGCTGGTCTATCAGTAAAGTGACT-AAGTCCTCCAGTTTGACAG
genomic: GCGCTCAACCTCCTGCTGTGCCTTCTGGTGGATTCAACTTCAATTAGAAGgtatccatgc ... ttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattctgtgctttcctttatcgtgtggacattattttgaattttgttaactgcagGAGCTTTGGCTGGTCTATCAGTAAAGTGACTAAAGTCCTCCAGTTTGACAGTCCAACAGTTGGGGGTCAAGTCAATGTCCTTGGGTCCTACAAGGTCCAG
                                           tgttaac  putative branch site (score: 2)
                                        ttttgtt  CT-rich tract
                           acattattttgaattt  TA-rich tract