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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcacaaataaatttaataacctttcgtgttttatactctattcaccatagtgaaaatactaatatatctagtaatttgtcttgtttagtgcaccacactgataaatttgttgatttggtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT

Basic information

species Glycine max
transcript GLYMA19G41420.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41420.3 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 10
gtatcacaaataaatttaataacctttcgtgttttatactctattcaccatag-tgaaaatactaatatatctagtaatttgtcttgtttagtgcaccacactgataaatttgttgatttggtcctt-ctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT
                                              || | |  | ||| ||  |||  || || || ||||| |   | |    | || |    |  |||| || || |  |  || | |||| || || || |||||||||||||||||||||||||| || ||||||||||| || ||||| |||||  | ||||||||||||
--------------------------------------------gtactagaaatcaaagta--aatgcatata-tagtttgtttctctcatcttatcataaatttttatttattcatatccttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT

upper sequence: GLYMA19G41420.3 (Glycine max), 3'ss of exon 10
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 8
gtatcacaaataaatttaataacctttcgtgttttatactctatt-caccatagtgaaaatactaatatatctagtaatttgtcttgtttagtgcaccacactgataaatttgttgatttggtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT
                     |        | |  |  |||  ||  | | |  |   || | |    |   | |  ||||| ||          ||||   || ||     |||| | | ||  |   || | || ||||||||||||||||||||||| || ||| | || ||||| ||||| || ||||| || ||  |||||||||  |||
---------------------atgccagtagatcgaggctcctttgtatcgtgattgcaagaatggggttctttgggatttgcct---------aaccaacgtggtacggg-gttggtgtcgtgatggcagGTTTTCCACAAGCGCATGCCTCCAGAAGCAGTAGATCTGGTTTCAAGGCTACTTCAGTACTCTCCGAATCTGCGGTGCAATGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018658|gb|CX705400.1|CX705400
EST:     ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
genomic: ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
EST: gi|26047711|gb|CA784420.1|CA784420
EST:     ACTATACAGAATTTAAATTCCCACATATTAAAGCACATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
genomic: ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
EST: gi|9985319|gb|BE659427.1|BE659427
EST:     ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
genomic: ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
EST: gi|58024722|gb|CX711463.1|CX711463
EST:     ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
genomic: ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
EST: gi|193407080|gb|FK375255.1|FK375255
EST:     ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
genomic: ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
EST: gi|254328747|gb|GR833119.1|GR833119
EST:     ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
genomic: ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
EST: gi|193616610|gb|FK568242.1|FK568242
EST:     ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
genomic: ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
EST: gi|6963904|gb|AW432597.1|AW432597
EST:     ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTGTCACAAGCGCATGCCTCCAGAAGCTGTTGATGTAGTATCAAGACTA
genomic: ACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
EST: gi|209725617|gb|BW663106.1|BW663106
EST:     ATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA
genomic: ATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgtcttgtttagtgcaccacactgataaatttgttgatttggtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT
                                              tccttct  CT-rich tract
                            ataaatttgttgattt  TA-rich tract