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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatgatgtatgagatataacattgatgacaagtggaatgaagtcttcaataaatcattcagtcgattgagacgtttcactctctttgatacagGATTCAGGAATCATATGCTGAATGCTATTAAATACTTCTCAAGATCAAAGCAGAATGGCTTGTTTATTAATTCTTGTTTTTCTCACTGCCAAACTGAGAG

Basic information

species Glycine max
transcript GLYMA19G41240.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41240.1 (Glycine max), 3'ss of exon 10
lower sequence: AT3G05910.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaatatgatgtatgagatataacattgatgacaagtggaatgaagtcttcaataaatcattcagtcgattgagacgtttcactctcttt---gatacagGATTCAGGAATCATATGCTGAATGCTATTAAATACTTCTCAAGATCAAAGCAGAATGGCTTGTTTATTAATTCTTGTTTTTCTCACTGCCAAACTGAGAG
       | |||   | | || | |   |  ||  ||||| |  |  ||| ||   ||||||   ||  |  |  ||||| |   | | |      |||||||||||| | || ||||| |  |   | ||   ||||||||  || |  |||||||| ||||| || |||||||| ||| ||||||||||||| |||||
-------gttgttctatagatcata---aaaacttgtggacttcaccctttaaagcatcattgtatcactctaatcgtttaatcttttattcgagaacagGATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAG

upper sequence: GLYMA19G41240.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0060g00230.t01 (Vitis vinifera), 3'ss of exon 10
----gtaatatgatgtatgagatataacattgatgacaagtggaatgaagtcttcaataaatcattcagtcgattgagacgtttcact-ctctttgatacagGATTCAGGAATCATATGCTGAATGCTATTAAATACTTCTCAAGATCAAAGCAGAATGGCTTGTTTATTAATTCTTGTTTTTCTCACTGCCAAACTGAGAG
     |||| |  |   |||      |  || || |   |    || | | | | | ||| | | ||  |  |||||    ||||     ||||||  ||||||||||||||||| ||||||||||| || |||  ||||||||  || || || || || || || || ||||| |||||| |||||||||| || |||||
taatataatctctttattgaagctctatgttcat-attggccacataatgacatta-taatttaatctctttattgaagtatttcctaattctttggaacagGATTCAGGAATCAAATGCTGAATGCAATAAAAGGCTTCTCAATGTCTAAACAAAACGGGTTATTCATAAATTCATGTTTTGCTCACTGCCAGACAGAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtcttcaataaatcattcagtcgattgagacgtttcactctctttgatacagGATTCAGGAATCATATGCTGAATGCTATTAAATACTTCTCAAGATCAAAGCAGAATGGCTTGTTTATTAATTCTTGTTTTTCTCACTGCCAAACTGAGAG
                                            ctttgat  putative branch site (score: 5)
                                 cgtttcactctcttt  CT-rich tract
      ttcaataaatcatt  TA-rich tract