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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatcaactttgccagtgttttatcaattctcatatttgtcattttgcttccacactgttagtttttcagtgaacaccaaataaatctctttgaattttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCTGATTTGGTTGTGGAAATAAAAAAGTTGCTCGATACTATTCAACAGAACC

Basic information

species Glycine max
transcript GLYMA19G40930.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209700236|gb|BW664461.1|BW664461
EST:     GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
genomic: GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaact ... ttttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
EST: gi|193720621|gb|FK661991.1|FK661991
EST:     GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
genomic: GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaact ... ttttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
EST: gi|193687052|gb|FK630797.1|FK630797
EST:     GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
genomic: GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaact ... ttttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
EST: gi|58024431|gb|CX711172.1|CX711172
EST:     GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
genomic: GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaact ... ttttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
EST: gi|22932318|gb|BU549457.1|BU549457
EST:     GGGTTCCTNNAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
genomic: GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaact ... ttttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
EST: gi|58014455|gb|CX701197.1|CX701197
EST:     GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
genomic: GGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaact ... ttttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
EST: gi|48574957|gb|CO036162.1|CO036162
EST:     CCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT
genomic: CCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcatcaact ... ttttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccacactgttagtttttcagtgaacaccaaataaatctctttgaattttgcatagGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCTGATTTGGTTGTGGAAATAAAAAAGTTGCTCGATACTATTCAACAGAACC
                            aaataaatctctttga  TA-rich tract