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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcttgtttttcttaagattattctagacttatgtctaattgaatttaaatttacctatagaactataactcttcaaataatatgacttcaattttccagGCAAGTTCTTGAAGTGGTTGCTGGCTGTAAAGGCATCAACGATGTGAGTAACCTCAGCAGAACATTGTACCATAACACTTGCAG

Basic information

species Glycine max
transcript GLYMA19G38780.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G38780.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv08s0032g01170.t01 (Vitis vinifera), 3'ss of exon 10
--ttcttgtttttcttaagattattctagacttatgtctaattgaatttaaatttacctatagaactataactcttcaaataa-tatgacttcaat--tttccagGCAAGTTCTTGAAGTGGTTGCTGGCTGTAAAGGCATCAACGATGTGAGTAACCTCAGCAGAACATTGTACCATAACACTTGCAG
  |  ||    |   |||| | | ||   |||| | ||   |||  | |   ||| |||  | |  |||||  ||| || ||  | |  ||| | |  | ||||||||||||||||| || || ||||||||||||||  |||  ||  |     | || ||||  || |||||| | ||||| |||||
tatatttaaggtctctaagttaagtc---acttgt-tccttttgtgtgtgt-ttttcctcaaaatttataatactttaattatctgttccttaagtcgtctccagGCAAGTTCTTGAGGTTGTAGCTGGCTGTAAAGGTGTCAGTGACATAGAACAACTAAGCAAGACTTTGTACAACAACACCTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332144|gb|FK026382.1|FK026382
EST:     TATGATCAAGAGTGCATTGTTAAAGGCCGCAATGAACCTTGTTTAGTTAA                         GCAAGTTCTTGAAGTGGTTGCTGGCTGTAAAGGCATCAACGATGTGAGTAA
genomic: TATGATCAAGAGTGCATTGTTAAAGGCCGCAATGAACCTTGTTTAGTTAAgtaagtggga ... aattttccagGCAAGTTCTTGAAGTGGTTGCTGGCTGTAAAGGCATCAACGATGTGAGTAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaatttacctatagaactataactcttcaaataatatgacttcaattttccagGCAAGTTCTTGAAGTGGTTGCTGGCTGTAAAGGCATCAACGATGTGAGTAACCTCAGCAGAACATTGTACCATAACACTTGCAG
                  ctataac  putative branch site (score: 3)
                                               ttttcc  putative PPT
                              aaataatatgacttca  TA-rich tract