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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcttctgttattatttttctctgctcccaaattgctgatggtttcaatgtgattcaaacaataacaggcagttttgtgtcctatatttcttgtttctcagtgcattagtgttttcctcctaactttgatggcctgattgtaaaaatattgttctgcatgatgcagGTACCATGTTACAAATTTCTTTGCACCTAGCAGCCGATTTGGAACTCCAGAGGAACTTAAGTCTCTGATAGACAGAGCCCATGAACTGGGTCTGCTTGTT

Basic information

species Glycine max
transcript GLYMA19G37750.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37750.2 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G073054_T02 (Zea mays), 3'ss of exon 10
---------------------gtaactcttctgttattatttttctctgctcccaaattgctga-----tggtttcaatgtgattcaaacaataacaggcagttt--tgtgtcctatatttcttgtttctcagtgcattagtgttttcctcctaactttg-atggcctgattgtaaaaatattgttctgcatgatgcagGTACCATGTTACAAATTTCTTTGCACCTAGCAGCCGATTTGGAACTCCAGAGGAACTTAAGTCTCTGATAGACAGAGCCCATGAACTGGGTCTGCTTGTT
                       | |  ||   || |  ||| | | || |  ||     ||||     | |  |     || ||   ||||  | || ||  |   | || |  ||  || | ||    ||    |  |   ||    | || |||||  ||||  |   |||| |        | | |||  | ||||||||||||||| ||||| ||||| || || ||||| ||||| ||||||||||| || || ||||| || || | ||| ||||| || ||  |||| || 
gtattcacactttcaatggatccatccatttctttgtggtttctgtttgttttcatccatctgaaactcttgccttctaatgctttgtacaaacagagacatctgaatctgcctcattattttcgtaggccatataacaatcattagttttcttactttatatggttt--ctgtata--------tttccatttt-cagGTACCATGTTACGAATTTTTTTGCCCCAAGTAGCCGTTTTGGGACTCCAGAGGACCTAAAATCTCTTATTGATAAAGCGCATGAGCTTGGCTTGCTAGTG

upper sequence: GLYMA19G37750.2 (Glycine max), 3'ss of exon 10
lower sequence: AT2G36390.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaactcttctgttattatttttctctgctcccaaattgc-tgatggtttcaatgtgattcaaacaataacaggcagttttgtgtcctatatttcttgtttctcagtgcattagtgttttcctcctaactttgatggcctgattgtaaaaatattgttctgcatgatgcagGTACCATGTTACAAATTTCTTTGCACCTAGCAGCCGATTTGGAACTCCAGAGGAACTTAAGTCTCTGATAGACAGAGCCCATGAACTGGGTCTGCTTGTT
                ||| || || | |||  | ||  | ||      |   | | ||| ||  |||| | |      ||     | || ||  |  ||  |||| |   ||     |   |     | ||||||   |||   |   | | ||| | |     ||||||||| ||||| |||||||| || |||||||||||||| |||||||| || || || ||||| ||| ||||||||| ||| ||||| || |||||| |||||
---------------gtatcttccttt-ctcagatataacatgtctacctacctatcatttaatgaatacctg------ttaaaagccat-ttgttgattcttcagagtcgtaaaacctatttgtct-ccttgatgaa-tgagcatgtgact-ttgctatatgcaatgcagGTATCATGTGACAAATTTTTTCGCACCTAGCAGCCGCTTTGGAACACCTGATGACCTTAAATCTTTGATAGACAAAGCTCATGAGCTAGGTCTGGTTGTT

upper sequence: GLYMA19G37750.2 (Glycine max), 3'ss of exon 10
lower sequence: AT5G03650.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaactcttctgttattatttttctctgct----cccaaattgctgatggtt--tcaatgtgattcaaacaataacaggcagttttgtgtcctatatttct---tgtttctcagtgcat----tagtgttttcctcctaactttgatggcctgattgta----aaaatattg----ttctgc-atga-tgcagGTACCATGTTACAAATTTCTTTGCACCTAGCAGCCGATTTGGAACTCCAGAGGAACTTAAGTCTCTGATAGACAGAGCCCATGAACTGGGTCTGCTTGTT
|||  |||| |    ||| |   ||||  |    ||| |  |  |     ||  | | |||     ||  |    |    ||   | ||| | ||  | ||   ||| |||    |||     |||| |     ||  || | | || |  |  |  ||      || || |    ||||   |||| |||||||||||||| ||||| || ||||| || ||||| || | ||| || ||||||||||| || || |||||||| ||||| || ||  | || ||| | |||
gta-ttcttttaaccttagtgagctctagtagaaccctagatatttgcatttaattattgttgcagaactatacgcttttaggcctttgtaccatgatgctagctgtatcttcaagcaactagtagtatagatatctcaattcttattggtttttcttactgaggaacatggccatttctattatgaatgcagGTACCATGTCACAAACTTTTTTGCCCCAAGCAGTCGCTGTGGGACCCCAGAGGAACTAAAATCACTGATAGATAGAGCTCACGAGTTAGGCCTGGTAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcctcctaactttgatggcctgattgtaaaaatattgttctgcatgatgcagGTACCATGTTACAAATTTCTTTGCACCTAGCAGCCGATTTGGAACTCCAGAGGAACTTAAGTCTCTGATAGACAGAGCCCATGAACTGGGTCTGCTTGTT
                         attgtaaaaatattgt  TA-rich tract